Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24360 350 / 7e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G25950 168 / 1e-48 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT5G14280 168 / 1e-45 GeBP DNA-binding storekeeper protein-related (.1) AT3G27270 142 / 9e-39 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) AT5G18210 115 / 1e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 110 / 3e-27 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 109 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 108 / 2e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29370 107 / 3e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 107 / 6e-26 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036980 [exp] 489 / 2e-172 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036981 [exp] 297 / 3e-98 AT5G14280 243 / 9e-81 DNA-binding storekeeper protein-related (.1) Lus10014607 [exp] 155 / 2e-43 AT5G14280 311 / 3e-103 DNA-binding storekeeper protein-related (.1) Lus10020265 [exp] 114 / 2e-28 AT3G03980 359 / 5e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10002628 [exp] 107 / 6e-26 AT3G03980 358 / 1e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 105 / 4e-25 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032075 [exp] 100 / 6e-24 AT5G14280 197 / 3e-60 DNA-binding storekeeper protein-related (.1) Lus10016498 [exp] 101 / 1e-23 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 99 / 7e-23 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G056100 [exp] 416 / 8e-144 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 414 / 8e-143 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178800 [exp] 179 / 8e-53 AT3G25950 266 / 3e-90 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (.1) Potri.001G335100 [exp] 174 / 5e-51 AT5G14280 333 / 6e-112 DNA-binding storekeeper protein-related (.1) Potri.013G059000 [exp] 113 / 5e-28 AT4G13180 359 / 4e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G033500 [exp] 111 / 2e-27 AT3G03980 321 / 3e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 101 / 5e-24 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G059100 [exp] 101 / 6e-24 AT3G03980 360 / 1e-126 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 101 / 7e-24 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 100 / 1e-23 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10015821 pacid=23167697 polypeptide=Lus10015821 locus=Lus10015821.g ID=Lus10015821.BGIv1.0 annot-version=v1.0 ATGGCTGCTAGTACCGGATCCACCGCCGTCGTATTCAAATCCGCCGGCTTCGCCACCTCCTCCGGCGAAAGGAGCATTAACCAGTTCCGCCACTGGTCTC CGGTTCCCGCCAGCCTCCACTCCTCCCGCGCTGGCCTCCGCTGTAGATCGAGAAGCTCGGTATCCTCTTCCGGTGTGAGAGCTCAGGTTGCTGCAGTTGA ACCAGTCAGCAGTGAGTCAGTTAAGAAGGTGGAATCTCCAGTAGTTATTGTAACTGGAGCTTCCAGAGGAATCGGGAAAGCGATTGCATTGTCGTTGGGG AAAGCAGGTTGCAAGGTTCTGGTTAACTATGCAAGGTCATCTAAGGAGGCTGAGGAAGTCTCCAAAGAGATTGAAGCTTCCGGTGGTCAAGCTGTAACCT TTGGTGGTGATGTCTCTAAAGAAGAGGATGTGGAGGCCATGATGAAAACTGCTATTGATGCTTTTGGAACAGTTGACATACTGATAAACAATGCAGGGAT CACAAGGGACACTTTGTTGATGCGGATGAAGAAACAGCAGTGGCAGGATGTTATTGACCTCAATCTTACTGGTGTCTTCCTTTGTACACAGGCTGCAGCC AAGATCATGATGAAGAAAAGAAAGGGAAGGATTATCAATATCGCTTCAGTTGTTGGTTTGGTTGGTAACGTTGGGCAAGCTAACTACAGTGCTGCAAAGG CAGGAGTCATTGGATTCACAAAGAGTGTCGCAAAGGAATATTCAAGCAGAAATATCAACGTCAATGCTGTTGCTCCTGGATTCATTGCATCTGACATGAC TGCCAAGCTTGGGGATGACATTGAAAAGAAAATCTTGGAGACGATTCCTTTAGGGCGGTACGGTCAGCCGGAAGAGGTGGCCGGATTGGTGGAATTCCTC GCTCTGAACCCAGCTGCTGGCTACATGACCGGGCAGGTAAATGCCGCCGCAATCCTCTCCATCCACGCCTTACTCCTCTCACCCTCCTCCTCCGCCTCCT CCTTTGCATCTCTAAACTCCGCCGCACAGAGCTCCGTCCTCGAATTCAGCGCCGCATACTTCGTCGCCGACCTCACCCACTACCTCATCTTCTTCCCCCG CGACGTCCTCTTCATCCTCCACCACCTACAGACGCTATACGTCTTCCTCACCTCCCGCTGCCTCGTCGGCCGCGGAGCTTACGGCCTCCTGGAGCTGCTG ATCCTGGCGGAGGCGACCAGCGTGTGCCAGAACGTGTGGAGTATCTCTAGGTTTAGGAAAGGGGAGTCGCCGGCGGCGGCGAGGATGTACGAGTTTCTTT CGCCGCCGTTTTACGTGCTTTACTCTGTTGATAGGGGCGTTCTGGGGCCGGTGTTTATGATTCAGATGGTGGTTTTCTTCGTCGGCGGGGAGGCAGAGGG GCTGATTCCGGTGTGGGTATGGGGTTCGTGGATGGTGATGATTGTTTCGGCGATAGTGGTTAGTGTTTTGTGGGTGATGGGTCATTGGGTTGGTTGGTGT AAGGAGAAAGGGGTTTTAGGGTTTGATTTGGAGAAGAAGAAGATGATGATGAAGTTTAAGTAG
AA sequence Show only first row Show all	>Lus10015821 pacid=23167697 polypeptide=Lus10015821 locus=Lus10015821.g ID=Lus10015821.BGIv1.0 annot-version=v1.0 MAASTGSTAVVFKSAGFATSSGERSINQFRHWSPVPASLHSSRAGLRCRSRSSVSSSGVRAQVAAVEPVSSESVKKVESPVVIVTGASRGIGKAIALSLG KAGCKVLVNYARSSKEAEEVSKEIEASGGQAVTFGGDVSKEEDVEAMMKTAIDAFGTVDILINNAGITRDTLLMRMKKQQWQDVIDLNLTGVFLCTQAAA KIMMKKRKGRIINIASVVGLVGNVGQANYSAAKAGVIGFTKSVAKEYSSRNINVNAVAPGFIASDMTAKLGDDIEKKILETIPLGRYGQPEEVAGLVEFL ALNPAAGYMTGQVNAAAILSIHALLLSPSSSASSFASLNSAAQSSVLEFSAAYFVADLTHYLIFFPRDVLFILHHLQTLYVFLTSRCLVGRGAYGLLELL ILAEATSVCQNVWSISRFRKGESPAAARMYEFLSPPFYVLYSVDRGVLGPVFMIQMVVFFVGGEAEGLIPVWVWGSWMVMIVSAIVVSVLWVMGHWVGWC KEKGVLGFDLEKKKMMMKFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10015821 [exp]	0	1
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10009433 [exp]	1.0	0.9046
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10042806 [exp]	6.9	0.8151
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Lus10018485 [exp]	9.4	0.8126
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10002801 [exp]	13.2	0.7655
AT4G38510			ATPase, V1 complex, subunit B ...		Lus10027827 [exp]	14.0	0.8122
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	15.0	0.8065
AT1G74160			unknown protein		Lus10034677 [exp]	15.0	0.7929
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10041467 [exp]	18.5	0.8301
AT4G35335			Nucleotide-sugar transporter f...		Lus10026562 [exp]	19.0	0.8121
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	21.4	0.8061

Compare expression of checked genes

Lus10015821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.