Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 297 / 4e-99 ATPUP3 purine permease 3 (.1) AT1G28230 261 / 8e-85 ATPUP1, PUP1 purine permease 1 (.1) AT2G33750 248 / 4e-80 ATPUP2 purine permease 2 (.1.2) AT4G18220 155 / 3e-44 Drug/metabolite transporter superfamily protein (.1) AT1G30840 148 / 5e-41 ATPUP4 purine permease 4 (.1.2) AT4G18210 147 / 9e-41 ATPUP10 purine permease 10 (.1) AT2G24220 137 / 3e-37 ATPUP5 purine permease 5 (.1.2) AT4G18205 129 / 3e-34 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT1G44750 120 / 5e-31 ATPUP11 purine permease 11 (.1.2.3) AT4G18195 116 / 4e-29 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020416 [exp] 610 / 0 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10010757 [exp] 446 / 3e-157 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10035636 [exp] 436 / 8e-154 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10020950 [exp] 305 / 8e-102 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 270 / 7e-89 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10041133 [exp] 266 / 3e-87 AT1G28220 392 / 1e-136 purine permease 3 (.1) Lus10036465 [exp] 253 / 2e-81 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10008212 [exp] 199 / 2e-60 AT1G28220 293 / 7e-97 purine permease 3 (.1) Lus10008713 [exp] 197 / 5e-60 AT1G28220 288 / 2e-95 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 328 / 4e-111 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 232 / 1e-73 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G352100 [exp] 159 / 3e-45 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G147600 [exp] 158 / 8e-45 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352200 [exp] 155 / 5e-44 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.006G184900 [exp] 147 / 5e-41 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.014G043900 [exp] 142 / 4e-39 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.003G156900 [exp] 122 / 2e-31 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 108 / 1e-26 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10015832 pacid=23163283 polypeptide=Lus10015832 locus=Lus10015832.g ID=Lus10015832.BGIv1.0 annot-version=v1.0 ATGTCAAACCACAGTCAAGACCAGGACCAGATGATGAGCAAACCATTGAAGAAAGCCCTCCTAATCCTCAATTGCATCCTCCTCTCCGTCGGCAGCGCCC TCGGCCCACTCGTCCTCCGCCTCTACTTCATCAAAGGCGGCAAAGGAGTATGGATCTCCGCCGCCACCGAAACCGCCGGCTGGCCCTTGATAATCCCAGC CCTAGTCGGATCCTACCTATACCGCCGCAAGTCCACCTACCCCGCCGCCGCCAAAACCTCCTTCATCACATGGCGCCTGTTCCTCGCCTCCGCATTCTTC GGGATCCTGACCGGACTCGACGACTTCCTCTACGCCTCGGGGGTCAACTACCTCCCCGTGTCGACTTCGTCGCTGATCATCGCCTCTCAGTTGGCCTTCA CCGCTCTTTTTGCCTTCTTCCTGGTGAAGCAGCCGTTCACGGCGTTTTCGGTGAATTCTGTGTTCCTGCTTTGCGTTGGGGCCGGGACGCTGGCTATGCA CGCCGGATCTGATAGGCCGGCCCATGAGACCAACGCTCAGTATTTGAAAGGCTTCTTCATGACCGTCGGGGCAGCTGTGCTGTACGGGTTCGTGCTGCCC GGGATCGAGTTGACGTACAAAAAGGCTAAGCAGAATGTCAGTTACACCCTCGTCATGGAGATGCAGCTCGTTATATCTTTCTTCGCCACCGCTTTCAACT TTATCGGGATGATTGCCAGTAACGAAATTCAGGGAATGGGGAAAGAAGCGGCAGGTTTCGAGATGGGAGGGAAAGTGGGATACTGGTTGGTACTGACTTG GTCCGCGATCGTATGGCAATGCTTCTTCGTCGGGGCGGTGGGTGTTGTGTCCTGCGGATCTTCTTTGCTCTCCGGAATTCTCATCGCGACATTTTTACCG ATTACGGAGATACTGGCGGTGTTCATCTACCACGAGAGGTTCGGTCCGGAGAAAGCTGTGGCACTAGTTCTCTCCATTTGGGGATTCGTTTCTTACTTCT ATGGTGAGTACAAGCAGATGAAAAAGACCAAAGATCCTACACTTCCTACCATGGGTTGA
AA sequence Show only first row Show all	>Lus10015832 pacid=23163283 polypeptide=Lus10015832 locus=Lus10015832.g ID=Lus10015832.BGIv1.0 annot-version=v1.0 MSNHSQDQDQMMSKPLKKALLILNCILLSVGSALGPLVLRLYFIKGGKGVWISAATETAGWPLIIPALVGSYLYRRKSTYPAAAKTSFITWRLFLASAFF GILTGLDDFLYASGVNYLPVSTSSLIIASQLAFTALFAFFLVKQPFTAFSVNSVFLLCVGAGTLAMHAGSDRPAHETNAQYLKGFFMTVGAAVLYGFVLP GIELTYKKAKQNVSYTLVMEMQLVISFFATAFNFIGMIASNEIQGMGKEAAGFEMGGKVGYWLVLTWSAIVWQCFFVGAVGVVSCGSSLLSGILIATFLP ITEILAVFIYHERFGPEKAVALVLSIWGFVSYFYGEYKQMKKTKDPTLPTMG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10015832 [exp]	0	1
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	1.7	0.8819
AT1G12380			unknown protein		Lus10024556 [exp]	2.2	0.8720
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	2.8	0.8744
AT1G07710			Ankyrin repeat family protein ...		Lus10025289 [exp]	3.5	0.8771
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10014742 [exp]	3.9	0.8755
AT5G25820			Exostosin family protein (.1)		Lus10023927 [exp]	4.0	0.8667
AT4G31330			Protein of unknown function, D...		Lus10020172 [exp]	4.9	0.8701
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10019441 [exp]	7.0	0.8684
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10041159 [exp]	9.9	0.8658
AT3G23150		ETR2	ethylene response 2, Signal tr...		Lus10021880 [exp]	10.0	0.8575

Compare expression of checked genes

Lus10015832 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.