Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16857 104 / 1e-24 GARP ARR1 response regulator 1 (.1.2) AT4G16110 100 / 3e-23 GARP ARR2 response regulator 2 (.1) AT2G01760 97 / 2e-22 GARP ARR14 response regulator 14 (.1) AT2G25180 94 / 4e-21 GARP ARR12 response regulator 12 (.1) AT1G67710 94 / 6e-21 GARP ARR11 response regulator 11 (.1) AT4G31920 92 / 3e-20 GARP ARR10 response regulator 10 (.1) AT5G58080 79 / 4e-16 GARP ARR18 response regulator 18 (.1) AT5G49240 74 / 1e-14 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 72 / 6e-14 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT2G27070 70 / 6e-13 GARP ARR13 response regulator 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016846 [exp] 110 / 2e-26 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 105 / 8e-25 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10006446 [exp] 98 / 1e-22 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 97 / 1e-22 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10005340 [exp] 96 / 2e-21 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10036303 [exp] 94 / 4e-21 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10041020 [exp] 94 / 8e-21 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10019058 [exp] 85 / 7e-18 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10025044 [exp] 79 / 3e-16 AT4G31920 220 / 6e-65 response regulator 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G152900 [exp] 135 / 1e-35 AT4G16110 179 / 2e-49 response regulator 2 (.1) Potri.014G077200 [exp] 133 / 5e-35 AT4G16110 181 / 1e-49 response regulator 2 (.1) Potri.008G135500 [exp] 110 / 2e-26 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 109 / 3e-26 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 107 / 1e-25 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 105 / 9e-25 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G053100 [exp] 102 / 6e-24 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 90 / 1e-19 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.006G262100 [exp] 89 / 3e-19 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G111300 [exp] 89 / 4e-19 AT2G25180 348 / 3e-111 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10015848 pacid=23163302 polypeptide=Lus10015848 locus=Lus10015848.g ID=Lus10015848.BGIv1.0 annot-version=v1.0 ATGAGTAAGAATGTTTTACCTAATGAAAATGATGAGAATTGTTCTTCTTTAGATATCAACATCTTGTTAGTAGACGATGATTCTGATCGTGTGACAATCG TCTCGAAAATGCTCCGGGCATCTGGACATACAGTTACAACTGCTAAACTGGGTAACGAAGCACTCTGCATCTTCAAGGACAAAGGAGATGAACTTGATGT GGTTCTTATAGAGATGCATTTGGCTGATATGGACAAATTCAAGTTTGTGGAGTCAATAAGAGAGATGACAACAAAGCCAGTTGTTGTGTTTTCCCGGGAG AGCATTGTGGATATGCGCAACCCAATCACCAAGGATGACATTGAAACCCTCTGGCGGCTCTTTATCACGAAGAAAGAATCGTTGCTGTCCAATAACTGTC ATGTGGAGTCCGTCCAGGAAAGTAGGAACAACAAGAGAAAACGAGTAGAAGAATGGAGTCCTGAAGGTGCAGAGAATGGTGTGTCAAAGAGGTCCAGGGT AGTCTGGACTCCAGAACTTCAAGCCAAGTTCAAGCTAGCGGTCCACGAATTAGGAATACATCGTGCTACTCCAACGAAGATACTTAAACATATGAATGTT CCCGGGCTGAATCGAAAAAATATCTCCAGCCATTTGCAGAAGTATAAGATCTACTTAAAGGAAAAATTAGAGGAACTGGAGAAGACATTACTTGAAGATG ACACTGCTTCACCGGTTCTGAAAAATCTACTGGCGGAAATCCATACAACTCCGATTCTTCGCAACAACAACAACAGCCAAGTGGGGAATCCTAGCCGGAG AAATTTTGGAATTTACGGTGGTTCTCCAGGAACAATGATGTCTGCCGGTTATTATTGGCAGCAACCTCGCTGGTCAGTCACAGTCACAGAGCTGGTGGAA ATTTTGGTGGAGGGTTTCTCCCGATACTTAGTCAACGATACCATCCCATGGCCGGGAGCTGTACCTGTTCTGAAAGCCTATTTGAGCAACTAA
AA sequence Show only first row Show all	>Lus10015848 pacid=23163302 polypeptide=Lus10015848 locus=Lus10015848.g ID=Lus10015848.BGIv1.0 annot-version=v1.0 MSKNVLPNENDENCSSLDINILLVDDDSDRVTIVSKMLRASGHTVTTAKLGNEALCIFKDKGDELDVVLIEMHLADMDKFKFVESIREMTTKPVVVFSRE SIVDMRNPITKDDIETLWRLFITKKESLLSNNCHVESVQESRNNKRKRVEEWSPEGAENGVSKRSRVVWTPELQAKFKLAVHELGIHRATPTKILKHMNV PGLNRKNISSHLQKYKIYLKEKLEELEKTLLEDDTASPVLKNLLAEIHTTPILRNNNNSQVGNPSRRNFGIYGGSPGTMMSAGYYWQQPRWSVTVTELVE ILVEGFSRYLVNDTIPWPGAVPVLKAYLSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10015848 [exp]	0	1
AT5G13660			unknown protein		Lus10005963 [exp]	6.4	0.8721
					Lus10006164 [exp]	9.1	0.8721
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10000481 [exp]	11.1	0.8721
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000683 [exp]	12.8	0.8721
					Lus10001790 [exp]	14.3	0.8721
AT5G20260			Exostosin family protein (.1)		Lus10039981 [exp]	15.7	0.8721
AT1G73700			MATE efflux family protein (.1...		Lus10042705 [exp]	16.9	0.8721
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030409 [exp]	18.1	0.8721
AT4G38260			Protein of unknown function (D...		Lus10016023 [exp]	19.2	0.8705
AT2G01690			ARM repeat superfamily protein...		Lus10003679 [exp]	21.0	0.8639

Compare expression of checked genes

Lus10015848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.