Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73170 678 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10420 545 / 0 SPD1 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G33290 340 / 3e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012291 [exp] 1183 / 0 AT1G73170 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017471 [exp] 528 / 9e-179 AT3G10420 835 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028811 [exp] 526 / 9e-179 AT3G10420 830 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G375900 [exp] 778 / 0 AT1G73170 717 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G228600 [exp] 513 / 7e-174 AT3G10420 819 / 0.0 SEEDLING PLASTID DEVELOPMENT 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10015985 pacid=23154460 polypeptide=Lus10015985 locus=Lus10015985.g ID=Lus10015985.BGIv1.0 annot-version=v1.0 ATGATTTGCAACATTTCTCCTCCGATTCATCTCAAACCGTGCCCATTTCCCATCACCCAATCCCATCCACGCCAAGCTTCAGCTCCTACCATCAAACTCC CTCATCATCAGCACACCTCACTCCGTTTCCCTACTCACAGTGGCAGAAACCTCGCCAGAAACTGCAGCGGGTTTCTTCAGTCAACCACCGATGTATCTTC TACCTCTTCTTCTTCATCGTCGTCTGACGAAGGCTTTGACGCAGAATTGGACCGCCTTCTTGCCCTGTTACCCGAAGAGATGAGGGCGAGGGTTCTCGAG CACCCCGAGCTGGTCGGCTTAGTCGAGGTGGTTTTGGACCTAGGTCGCCCCCCGCTCGCTAGGTTTCCGTCCGGGGACTTCATTTTGTCCGATTCGGCCA TCACGCTTCAGGACCTTCAGTTTGCTGCATCTCAGGTTGGCGATTTTGCAATCGACAACCGAGCTGGCATAAGCAGGACGTTGCACCGGATTAGTGCCAT TAGGAATCGTAAGGGTGAAATAATCGGTTTGACTTGCCGTGTCGGTCGAGCGATTCAGGGAAGTGCTAGTTTGCTGAGGGATTTGGTTCAGGATGGGGCT TCGATACTGCTGATTGGGCCTCCTGGGGTGGGGAAAACTACAATCATCAGGGAGATAGCTAGGATGCTTGCAAATGATTATCAAAAGCGAGTTATGATTG TTGACACTTCGAATGAGATAGGTGGAGATGGTGATATACCTCATTCTGGAATTGGCAATGCTCGACGGATGCAGGTTGGGAATTCTGAAATGCAACATAA GGTGCTAATAGAAGCTGTTGAAAATCACATGCCCCAAGTTATTGTCATAGATGAGATTGGAACAAAACTAGAAGCACTGGCTGCCAGTACGATTGCACAG CGAGGAATTCAGCTCGTGGCAACTGCTCATGGTGTTACAATAGAGAATTTGATAATGAATCCTTCTCTTGACATGCTTATTGGTGGTATACAGAGTGTAA CATTAGGGGATGATGAAGCTAGTCGACGAGGTGTCCAAAAGACTGTGCTAGAGAGGAAAGGACCTTCAACTTTTGGTTGTGGTGTTGAGATCATTTCTAA AACTGAGCTGCGAGTTCATCGGTATCTGGAATCAACAGTGGATGCAGTCCTAGCAGGTCGATCTCCTGTTGTCGATGTTCGCAAGATGAGATTGCAAGTG TCGAATGGCACAACAGAAGTTGAACCCTACGCCGATATATCTGTCAGAAAGGAACAAGATACCTCTCTTGGAGGTCACGAGTTCATGGATGAACGTCTCA GTGTTAGTGAATTCACGATTGAGTCTCCTTTAAGCACGTCAGATCTCTCATTAGATGTTCAACCATTTCGCCTCTATGTCTACGGGATCCTGGAGGCAAG CGTTATCCAAGTGATTAATCAGTTGGAGGTTGCAGTTCAATTAACTTACAACATTAGCGAGGCAGATGGACTTCTTGCCTTGCAATCAAAAATCAAGAAG AATCTCAAAATTCAAGCGGCAGCGGAATCACATAACATACCCATATACGTGACAAAGACAAGTTCTTTGGTGCAAATAACAAAGGCCATAAAGGCATTGG TCAATGATCACGATGCTGATGGATCAAACACTGATGGTAAATCTTCGGAGAAGATGGATGCTCTCGAGGAGACGAGGATAGCAATCGAGGAAGTAGTGAT ACCGAATGGGGAACCAGTCGAGCTTCTCCCAAGACAATCCCACATTATCACTCTCCAGATGAACTTCATTCAGGGATACAAACTCCAGTCCGAGATACTC GGTCGAGGTCCAGAGGCTCGCCTCCGGATCTTACCATATACGACTCAGAAGAAGGACAACACGAAATCCAACATCGATAAAGAAAGTGGTAATGCCAATG ATGATGATGAAGAAAACGATGACGAAGATGACAACTTGTCGGCTGCGAATGGAGGAACCAATGGATCAATCTACACAGTCGACAAGCTGCCCTTCTTGCC GGATTCTTTCTGA
AA sequence Show only first row Show all	>Lus10015985 pacid=23154460 polypeptide=Lus10015985 locus=Lus10015985.g ID=Lus10015985.BGIv1.0 annot-version=v1.0 MICNISPPIHLKPCPFPITQSHPRQASAPTIKLPHHQHTSLRFPTHSGRNLARNCSGFLQSTTDVSSTSSSSSSSDEGFDAELDRLLALLPEEMRARVLE HPELVGLVEVVLDLGRPPLARFPSGDFILSDSAITLQDLQFAASQVGDFAIDNRAGISRTLHRISAIRNRKGEIIGLTCRVGRAIQGSASLLRDLVQDGA SILLIGPPGVGKTTIIREIARMLANDYQKRVMIVDTSNEIGGDGDIPHSGIGNARRMQVGNSEMQHKVLIEAVENHMPQVIVIDEIGTKLEALAASTIAQ RGIQLVATAHGVTIENLIMNPSLDMLIGGIQSVTLGDDEASRRGVQKTVLERKGPSTFGCGVEIISKTELRVHRYLESTVDAVLAGRSPVVDVRKMRLQV SNGTTEVEPYADISVRKEQDTSLGGHEFMDERLSVSEFTIESPLSTSDLSLDVQPFRLYVYGILEASVIQVINQLEVAVQLTYNISEADGLLALQSKIKK NLKIQAAAESHNIPIYVTKTSSLVQITKAIKALVNDHDADGSNTDGKSSEKMDALEETRIAIEEVVIPNGEPVELLPRQSHIITLQMNFIQGYKLQSEIL GRGPEARLRILPYTTQKKDNTKSNIDKESGNANDDDEENDDEDDNLSAANGGTNGSIYTVDKLPFLPDSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	0	1
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	2.8	0.8550
AT5G08450			unknown protein		Lus10004298 [exp]	5.3	0.7882
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10026172 [exp]	6.1	0.8720
					Lus10032317 [exp]	13.3	0.8005
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10041759 [exp]	14.3	0.8207
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	15.9	0.8137
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	16.4	0.7201
					Lus10013098 [exp]	19.2	0.7460
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Lus10017757 [exp]	21.6	0.8120
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	23.1	0.7204

Compare expression of checked genes

Lus10015985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.