Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47670 434 / 2e-148 Transmembrane amino acid transporter family protein (.1) AT4G35180 338 / 2e-111 LHT7 LYS/HIS transporter 7 (.1) AT5G40780 226 / 2e-68 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT3G01760 216 / 1e-64 Transmembrane amino acid transporter family protein (.1) AT1G24400 215 / 2e-64 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G61270 214 / 7e-64 Transmembrane amino acid transporter family protein (.1) AT1G48640 206 / 5e-61 Transmembrane amino acid transporter family protein (.1) AT1G67640 199 / 2e-58 Transmembrane amino acid transporter family protein (.1) AT1G25530 182 / 4e-52 Transmembrane amino acid transporter family protein (.1) AT1G71680 176 / 1e-49 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012281 [exp] 449 / 4e-157 AT1G47670 221 / 5e-68 Transmembrane amino acid transporter family protein (.1) Lus10003338 [exp] 435 / 4e-148 AT1G47670 565 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10032751 [exp] 431 / 4e-147 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10011668 [exp] 431 / 9e-147 AT1G47670 918 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10023971 [exp] 418 / 1e-141 AT1G47670 526 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10025113 [exp] 417 / 3e-141 AT1G47670 529 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10022642 [exp] 389 / 4e-131 AT4G35180 431 / 7e-148 LYS/HIS transporter 7 (.1) Lus10003339 [exp] 378 / 7e-127 AT1G47670 410 / 9e-140 Transmembrane amino acid transporter family protein (.1) Lus10022641 [exp] 249 / 2e-78 AT1G47670 302 / 4e-99 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012900 [exp] 530 / 0 AT1G47670 577 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181100 [exp] 435 / 1e-148 AT1G47670 384 / 2e-128 Transmembrane amino acid transporter family protein (.1) Potri.014G036500 [exp] 427 / 1e-145 AT1G47670 922 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.004G181200 [exp] 423 / 1e-143 AT1G47670 504 / 3e-175 Transmembrane amino acid transporter family protein (.1) Potri.004G181000 [exp] 416 / 4e-142 AT1G47670 405 / 5e-138 Transmembrane amino acid transporter family protein (.1) Potri.009G140800 [exp] 404 / 3e-136 AT1G47670 509 / 6e-177 Transmembrane amino acid transporter family protein (.1) Potri.001G335300 [exp] 215 / 2e-64 AT5G40780 752 / 0.0 lysine histidine transporter 1 (.1.2) Potri.008G179000 [exp] 204 / 4e-60 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.010G128300 [exp] 202 / 1e-59 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G055800 [exp] 200 / 1e-58 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10015997 pacid=23154357 polypeptide=Lus10015997 locus=Lus10015997.g ID=Lus10015997.BGIv1.0 annot-version=v1.0 ATGGGGGAATCTGCAGCATTTGAAATAAGTCCCTTAGCTTCTGTTGTGCACTCTCCCTATTGCTTAGAATCAGCTGGTGGCATCAGCAAGGTTAATTATA ATTATGCTACTCCTCCTCCTCAAGAGTCATGGCTTCCGATCACCGAGTCAAGGAACGGTAACGCCTTGTATGCTGCGTTTCACACGCTTTGTTCCGGAAT CGGGTTCCAAGCCCTCCTTCTCCCCTTCGCTTTCGCCACCCTTGGCTGGATTTGGGGAATATTGAGCTTGGCTGTTGTCTTTGTGTGGCAACTCTACACT ATGTGGATTTTGATTCAGTTGCATGAACCGGATGGGTACTGTGGGGTGCGTTACAGTCGGTATCTCGGCCTATCCATGGCTGCCTTTGGTGAGAACGCTT TCACCCGGTCCGGGGAGAAGGGAGGGAAGTTGCTGGCGCTGTTCCCGACAATGTACCTATCAGGAGGAACATGCGTAACTCTGATCATAATAGGAGGCGG CACCCTCAAAACATTCTTCGAAATTATCGTCCAACAAAACCATCCCGGCCATTCTCCGCCGCCTTTGAACACGGTGGAATGCTACCTAGTATTCACTCTT GCTGCAGTTGTGCTGTCTCTGTTTTTCCCAAACTTGAATTCAGTAGCCAAAGTGTCTCTCATTGGAGCAGTCACCGCCGTTACCTACTGTGCTTTGATAT TGGCTGCCACATTAGTTCAAGGCAAAAGCATAACTAATAAGGATCATCGTCGGCCTGTCTCAAAGGATATTGTTCATGGCGCGATTGATAAAGTCTGTGC CATTCTCAACGGCGTTGGAATTGTGGCTTTGGCCTTCCGAGGTCACAATCTGGTGCTCGAAATTCAGGGCACAATGCCATCAAGTGGAAAGACGCCATCA AAGGTGCCAATGTGGAGAGGAGTTCGGATAGCTTACCTTGTTATAGCCCTATGTCTGTTCCCACTTGCAATTGTTGGTCATTGGGCATATGACAATTTGA TCCAGGCTGAAGACAGAGGATTAATGATGTTGAACGCATTGTACAAATACCACGGTCGCGGAGCATCATCCGTGGTAGTTTTGGCTTCGGCAAGTTTTCT GATCGTGATTAACAGCCTGAGCTCTTTCCAAATCTATGCAATGCCGGCGTTCGACAATCTAGAGCTCCGATACACAAGCAGGAGAGATAGACCGTGCCCG TCGTGGCTCCGTTCGATGCTCCGGATGTTCTTCGGAAGCCTGACATGCTTCATCGCAGTGGCTCTTCCGTTCCTGCTGAGCTTGGCAGGATTGATCGGCG GCATTGCTCTGCCGCTGACCTTGGCTTATCCGTGTTTCATGTGGATTGTGTTAAGGAAGCCAGCCAAATACAGCGGGGAGTGGTGTTTGAATTGCGGTTT AGGGGTTGCTGGAATGGTGCTCAGCTTACTAGTGGTGGCCGCAGCCATTTGGAGTATTGTTACGAGAGGAATCGAAGTCCATTTCTTTAAGCCCTAG
AA sequence Show only first row Show all	>Lus10015997 pacid=23154357 polypeptide=Lus10015997 locus=Lus10015997.g ID=Lus10015997.BGIv1.0 annot-version=v1.0 MGESAAFEISPLASVVHSPYCLESAGGISKVNYNYATPPPQESWLPITESRNGNALYAAFHTLCSGIGFQALLLPFAFATLGWIWGILSLAVVFVWQLYT MWILIQLHEPDGYCGVRYSRYLGLSMAAFGENAFTRSGEKGGKLLALFPTMYLSGGTCVTLIIIGGGTLKTFFEIIVQQNHPGHSPPPLNTVECYLVFTL AAVVLSLFFPNLNSVAKVSLIGAVTAVTYCALILAATLVQGKSITNKDHRRPVSKDIVHGAIDKVCAILNGVGIVALAFRGHNLVLEIQGTMPSSGKTPS KVPMWRGVRIAYLVIALCLFPLAIVGHWAYDNLIQAEDRGLMMLNALYKYHGRGASSVVVLASASFLIVINSLSSFQIYAMPAFDNLELRYTSRRDRPCP SWLRSMLRMFFGSLTCFIAVALPFLLSLAGLIGGIALPLTLAYPCFMWIVLRKPAKYSGEWCLNCGLGVAGMVLSLLVVAAAIWSIVTRGIEVHFFKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	0	1
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10032640 [exp]	2.2	0.9284
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10032169 [exp]	4.9	0.9036
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10032446 [exp]	5.9	0.8605
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10010530 [exp]	6.0	0.8753
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10018027 [exp]	6.3	0.8585
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	7.1	0.8838
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Lus10004428 [exp]	7.1	0.8664
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10012959 [exp]	9.6	0.7951
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Lus10041390 [exp]	10.1	0.8644
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	10.6	0.7857

Compare expression of checked genes

Lus10015997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.