Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50250 1059 / 0 FTSH1 FTSH protease 1 (.1) AT5G42270 1035 / 0 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT2G30950 506 / 6e-171 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 502 / 2e-169 FTSH8 FTSH protease 8 (.1) AT5G15250 499 / 2e-168 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G26140 415 / 3e-135 FTSH4 FTSH protease 4 (.1) AT2G29080 414 / 1e-133 FTSH3 FTSH protease 3 (.1) AT5G53170 410 / 4e-132 FTSH11 FTSH protease 11 (.1) AT1G07510 404 / 6e-130 FTSH10 FTSH protease 10 (.1) AT5G58870 389 / 4e-124 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012277 [exp] 929 / 0 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 912 / 0 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10034572 [exp] 758 / 0 AT5G42270 791 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 499 / 3e-168 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 499 / 8e-167 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001573 [exp] 422 / 1e-136 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10016516 [exp] 417 / 2e-135 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10018210 [exp] 404 / 9e-130 AT5G58870 1049 / 0.0 FTSH protease 9 (.1) Lus10040695 [exp] 394 / 3e-126 AT5G58870 1047 / 0.0 FTSH protease 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G012000 [exp] 1080 / 0 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 1064 / 0 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 506 / 6e-171 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G215100 [exp] 502 / 4e-169 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 500 / 4e-168 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.009G033600 [exp] 410 / 4e-132 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.006G227700 [exp] 407 / 5e-132 AT2G26140 1066 / 0.0 FTSH protease 4 (.1) Potri.015G020700 [exp] 406 / 8e-131 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.016G099800 [exp] 404 / 1e-129 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.012G000700 [exp] 397 / 2e-127 AT5G53170 1076 / 0.0 FTSH protease 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10016003 pacid=23154397 polypeptide=Lus10016003 locus=Lus10016003.g ID=Lus10016003.BGIv1.0 annot-version=v1.0 ATGGCGTCGTCAACAATCTCCAACCCTCTGCTCTCTTCCACCTTCTTCACCAACAAAACCAACTCCCTAATCTCCCTACCAACTCCCAAAACCACCAGAT CCCACCTGAAATTCCGACCCTGCCGATCTATTCTCAGCAGCAATCAATCCGATTCTTCCACTTGTTTCAAATCCTCATCTTCCAAATCGGCACTAGCTGC TGCTCTCCTCTTCTCCTCACTCTCCTCATCGCCACAAGCTTTTGCCGTCGATAACGCTCCTCCACCAGCTCAGCCTCCGGTCATCGAAGCTCAACAAGCG AAACCTAATTTGAATTCCCCATTCTCAAATCAGAACGTCCTCCTCACAGCTCCCAAGCCCGACTCTCCGCCGGACATCCCCGACGGCAACCAATGGCGTT ACAGCGAGTTCCTCAACGCCGTCAAGAAGGGCAAAGTCGAGCGGGTGCGGTTCAGCAAAGACGGATCCGTACTCCAGCTGACGGCCGTCGACGGCCGCCG AGCAAATGTTATTGTTCCGAACGATCCTGACCTAATCGACATACTGGCGATGAACGGCGTCGACATCTCTGTCTCCGAGGGCGATTCTGCCAATGGTGGA TTGTTCGGTTTCATCGGGAATCTCATTTTCCCCTTCCTCGCCTTCGCTGGATTGTTCTTCCTGTTCCGCCGGTCGCAAGGCGGCGCCGGTGGGCCAGGCG GGCTAGGCGGCGGTCCGATGGACTTCGGGCGGTCGAAATCCAAGTTCCAGGAAGTTCCAGAGACCGGTGTCACGTTCGCCGACGTCGCCGGCGCCGATCA GGCTAAGTTGGAGCTTCAGGAGGTTGTTGATTTCCTAAAAAATCCGGATAAGTACACAGCTCTTGGTGCTAAGATTCCGAAAGGATGTCTGCTAGTCGGG CCTCCGGGGACCGGGAAAACTCTTCTGGCGAGAGCTGTGGCCGGAGAGGCTGGAACTCCGTTCTTCTCCTGCGCGGCGTCGGAGTTCGTGGAGCTGTTTG TGGGAGTTGGGGCTTCTAGGGTTAGGGATTTGTTTGAGAAGGCTAAGTCGAAGGCTCCTTGCATTGTGTTCATTGATGAGATTGATGCTGTAGGGAGACA GAGAGGAGCTGGTCTTGGTGGTGGAAATGATGAAAGGGAACAGACTATTAATCAACTGTTGACGGAAATGGACGGGTTTTCTGGGAATTCCGGTGTCATT GTTTTGGCGGCTACGAATCGGCCGGATGTTCTTGATTCGGCTTTGTTGAGGCCTGGGAGGTTTGATCGACAAGTGACTGTGGATCGGCCTGATGTTGCTG GCAGAGTCAAGATTCTTCAGGTGCATTCAAGAGGCAAAGCGCTTGCAAAGGATGTGGACTTCGACAAGATTGCGCGAAGAACGCCTGGTTTCACAGGAGC CGATTTGCAGAACCTGATGAACGAAGCAGCTATTCTTGCAGCTAGACGCGACCTCAAGGAAATTAGCAAAGACGAGATAGCTGATGCTCTGGAGAGGATT ATCGCTGGACCAGAGAAGAAGAACGCTGTTGTCTCAGAAGAGAAGAAGAAGCTCGTTGCCTATCACGAGGCTGGCCATGCTTTAGTTGGTGCACTTATGC CTGAATACGATCCCGTAGCCAAGATTTCGATTATTCCTCGAGGACAAGCTGGCGGGCTTACCTTCTTCGCTCCAAGTGAGGAGCGGCTCGAATCTGGATT GTACAGCAGAAGCTATTTGGAGAATCAAATGGCCGTAGCACTTGGGGGGAGGGTTGCAGAAGAGGTGATATTTGGGCAAGAGAATGTGACAACAGGAGCA TCCAACGACTTCATGCAAGTTTCGAGGGTAGCAAGGCAAATGGTCGAGAGATTTGGATTCAGCAAAAAAATCGGGCAAGTTGCCATCGGCGGTGCGGGTG GAAACCCCTTCTTAGGTCAACAGATGTCGTCACAGAAAGATTACTCGATGGCAACAGCAGATGTTGTGGACGCGGAAGTCAGAGAGCTCGTGGAGACGGC CTATGCAAGGGCCACCGAAATCGTGACTACTCACATCGACATCCTGCACAACCTAGCGCAGCTTTTGATAGAGAAGGAAACTGTGGATGGAGAAGAGTTC ATGAGCCTGTTCATTGACGGAAAAGCCGAGCTCTACGTTGCTTGA
AA sequence Show only first row Show all	>Lus10016003 pacid=23154397 polypeptide=Lus10016003 locus=Lus10016003.g ID=Lus10016003.BGIv1.0 annot-version=v1.0 MASSTISNPLLSSTFFTNKTNSLISLPTPKTTRSHLKFRPCRSILSSNQSDSSTCFKSSSSKSALAAALLFSSLSSSPQAFAVDNAPPPAQPPVIEAQQA KPNLNSPFSNQNVLLTAPKPDSPPDIPDGNQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGDSANGG LFGFIGNLIFPFLAFAGLFFLFRRSQGGAGGPGGLGGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVG PPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVI VLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEIADALERI IAGPEKKNAVVSEEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQENVTTGA SNDFMQVSRVARQMVERFGFSKKIGQVAIGGAGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYARATEIVTTHIDILHNLAQLLIEKETVDGEEF MSLFIDGKAELYVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G42270		FTSH5, VAR1	VARIEGATED 1, FtsH extracellul...		Lus10016003 [exp]	0	1
AT5G50100			Putative thiol-disulphide oxid...		Lus10004232 [exp]	1.4	0.9215
AT3G22840		ELIP1	EARLY LIGHT-INDUCABLE PROTEIN,...		Lus10006620 [exp]	2.4	0.9060
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10037836 [exp]	2.6	0.8452
AT5G50100			Putative thiol-disulphide oxid...		Lus10042142 [exp]	3.5	0.8938
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020849 [exp]	4.0	0.8277
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Lus10003971 [exp]	4.1	0.8276
AT5G13030			unknown protein		Lus10031224 [exp]	4.2	0.8378
AT4G13010			Oxidoreductase, zinc-binding d...		Lus10002346 [exp]	4.7	0.8108
AT2G40890		REF8, CYP98A3, ...	cytochrome P450, family 98, su...		Lus10020850 [exp]	5.5	0.8301
AT3G16180			Major facilitator superfamily ...		Lus10023663 [exp]	7.4	0.8515

Compare expression of checked genes

Lus10016003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.