Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20580 214 / 6e-73 Small nuclear ribonucleoprotein family protein (.1) AT1G76300 206 / 6e-70 SMD3 snRNP core protein SMD3 (.1) AT5G27720 60 / 2e-12 LSM4, EMB1644 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) AT4G02840 51 / 4e-09 Small nuclear ribonucleoprotein family protein (.1.2) AT3G07590 47 / 1e-07 Small nuclear ribonucleoprotein family protein (.1.2) AT1G20600 40 / 0.0001 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G03330 38 / 0.0003 Small nuclear ribonucleoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012263 [exp] 237 / 5e-82 AT1G20580 219 / 3e-75 Small nuclear ribonucleoprotein family protein (.1) Lus10013227 [exp] 237 / 5e-82 AT1G20580 214 / 2e-73 Small nuclear ribonucleoprotein family protein (.1) Lus10030747 [exp] 237 / 5e-82 AT1G20580 214 / 2e-73 Small nuclear ribonucleoprotein family protein (.1) Lus10029426 [exp] 62 / 7e-12 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10004221 [exp] 61 / 1e-11 AT5G27720 182 / 2e-57 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10028022 [exp] 49 / 4e-08 AT3G07590 181 / 1e-60 Small nuclear ribonucleoprotein family protein (.1.2) Lus10003727 [exp] 49 / 1e-07 AT3G07590 180 / 1e-58 Small nuclear ribonucleoprotein family protein (.1.2) Lus10025186 [exp] 46 / 3e-07 AT3G07590 169 / 6e-56 Small nuclear ribonucleoprotein family protein (.1.2) Lus10016068 [exp] 46 / 3e-07 AT3G07590 169 / 6e-56 Small nuclear ribonucleoprotein family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G010200 [exp] 232 / 4e-80 AT1G20580 214 / 5e-73 Small nuclear ribonucleoprotein family protein (.1) Potri.005G251100 [exp] 229 / 3e-79 AT1G20580 211 / 6e-72 Small nuclear ribonucleoprotein family protein (.1) Potri.002G205700 [exp] 60 / 3e-12 AT5G27720 179 / 5e-59 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.014G130700 [exp] 59 / 9e-12 AT5G27720 176 / 7e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Potri.002G054800 [exp] 52 / 3e-09 AT3G07590 183 / 1e-61 Small nuclear ribonucleoprotein family protein (.1.2) Potri.005G207900 [exp] 44 / 1e-06 AT4G02840 152 / 3e-49 Small nuclear ribonucleoprotein family protein (.1.2) Potri.004G219000 [exp] 37 / 0.0004 AT1G03330 184 / 1e-62 Small nuclear ribonucleoprotein family protein (.1) Potri.003G014900 [exp] 37 / 0.0004 AT1G03330 184 / 1e-62 Small nuclear ribonucleoprotein family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0527 [flax] [poplar] Sm-like PF01423 [flax] [poplar] LSM LSM domain
Representative CDS sequence Show only first row Show all	>Lus10016013 pacid=23154401 polypeptide=Lus10016013 locus=Lus10016013.g ID=Lus10016013.BGIv1.0 annot-version=v1.0 ATGAGCAGAAGCTTGGGAATACCGGTAAAGCTACTCCACGAAGCCTCCGGACATATCGTGACGGTGGAGCTTAAAAGCGGCGAGCTTTACAGAGGGAGCA TGTTGGAGTGCGAAGACAACTGGAATTGTCAGCTCGAGAACATTACTTACACTGCTAAGGATGGAAAGATTTCACAGCTTGAGCATGTCTTTATCAGAGG CAGCAAAGTCAGGTTTATGGTGATACCAGATATGCTAAAGAATGCCCCCATGTTTAAGCGTCTAGATGCTCGAATCAAGGGCAAGAGCGCCTCACTTGGA GTGGGGAGGGGGAGATCTGTTGCCATGCGTGCTAAAGCACAAGCTGCTACAGGCCGCGGAGGACCTGGAAGGGGAGCAGTACCACCTGTTAGGAGATAA
AA sequence Show only first row Show all	>Lus10016013 pacid=23154401 polypeptide=Lus10016013 locus=Lus10016013.g ID=Lus10016013.BGIv1.0 annot-version=v1.0 MSRSLGIPVKLLHEASGHIVTVELKSGELYRGSMLECEDNWNCQLENITYTAKDGKISQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDARIKGKSASLG VGRGRSVAMRAKAQAATGRGGPGRGAVPPVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20580			Small nuclear ribonucleoprotei...		Lus10016013 [exp]	0	1
AT2G28720			Histone superfamily protein (....		Lus10028826 [exp]	1.0	0.9217
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10030401 [exp]	4.2	0.8748
AT1G27435			unknown protein		Lus10035173 [exp]	5.5	0.8855
AT2G15270			unknown protein		Lus10002814 [exp]	5.7	0.8879
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	8.5	0.8848
AT5G55140			ribosomal protein L30 family p...		Lus10011966 [exp]	15.2	0.8443
AT1G32580			plastid developmental protein ...		Lus10023744 [exp]	17.5	0.8630
AT3G59470	FAR1_related		Far-red impaired responsive (F...		Lus10020226 [exp]	17.7	0.8443
AT1G76860			Small nuclear ribonucleoprotei...		Lus10040487 [exp]	18.9	0.8589
AT1G11240			unknown protein		Lus10011247 [exp]	19.3	0.8642

Compare expression of checked genes

Lus10016013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.