Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 433 / 6e-132 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 391 / 5e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G44510 359 / 2e-105 TAO1 target of AVRB operation1 (.1) AT1G69550 358 / 5e-104 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G18360 342 / 2e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46260 341 / 8e-99 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G36150 334 / 2e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 332 / 8e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 328 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G11170 324 / 1e-93 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015350 [exp] 1586 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 1489 / 0 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 857 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10023051 [exp] 823 / 0 AT4G12010 415 / 2e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10018021 [exp] 814 / 0 AT4G12010 434 / 5e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 785 / 0 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 729 / 0 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019654 [exp] 704 / 0 AT4G12010 376 / 2e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10004075 [exp] 679 / 0 AT4G12010 348 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068200 [exp] 588 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 565 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 533 / 4e-170 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G010800 [exp] 522 / 2e-165 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 506 / 9e-157 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 491 / 6e-153 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 479 / 2e-149 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 462 / 3e-143 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 465 / 5e-143 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 468 / 3e-142 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10016029 pacid=23154448 polypeptide=Lus10016029 locus=Lus10016029.g ID=Lus10016029.BGIv1.0 annot-version=v1.0 ATGGCGGCGCTATCGGAGAAGAAGATAAGGACCTTCATCGACACTATGCTCGGGAAAGGGGACAGCATAACCGAGCTCCTCTCCGTGCTCAATCGCTCGG CCGTATCGGTCATCATATTCTCCGAGAGGTTCGCGGATTCGCCGTGGTGCCTCGATGAGGTGGCCACCATTTCACGGAGCATCAAGGAGTTCGGCCACAG GGTGCTCCCCGTTTTCTACAACGTCGACCCGTCGGAGGTCGACGGTGACACCGGGAGCTACGCCGCCATGATCGAGAGGCACGACCGGGAGAAATACCCG CCGGCGGTGAAGATGAAGTGGAGATCTGCGCTTAAAGAAGTCGTCGATAAGGCCGGGCTGACTTCCTGCGAGATTAGACTCGACTCGCAGCTGATAAAGG CAATAGTGGACAATGTGTGCAAAGAACTGGTAGACATGTCTCCAAGTCTCAAATCCAAGAATTATGTTGGTATGGATTCCCGCGTGTGGGAAGTGGAGCG GCTGCTTGATATAAACCGGTCTGATGACATTCGGATTGTGGGATTATGGGGCATGTCCGGGATCGGCAAGACCACTCTAGCCAAGGCCTTGTACCAAGGG TTCACCAACATCTCAAAAGAAGATGGTGGCACGAAGCATCACTTCGTTAAAGACGTTAATGCCAAATGGAAAGGTCGGCCTGACAGCTTAGAAGGACTCC AAAAGGAGCTCTATGCCACTCTCCTCTCCGAGCAAGACAAGAATATCACTTGTAGCGACCTGGAGACCAGTTACCGCAGGGCTCGCCTTTCCCGCTTGAA GGTGTTCATTGTCCTCGACGATGTTGAACATTGGTCCCAGCTCGAGCAGTTACTCCTCGGCGATGTCCTCAACCTCACGAAACTATTCGCCCTGGGGAGC AGAATCATCGTTACTACGAGAAACAAGAAAGTGCTTGAATTGGCAATGGCGCGGATCTACCCCGTGGAGAAGCTTAACCCTCAAGAGTCACTTCGGCTCT TCAGCCTGTACTCCTTCAGGCGGGAGATTCCGCCAGAGGACAGAAGGTATCAGTCGATTACAGCAGTGGGGTATTGCCAGGGATATCCACTGGCACTGAC GGTGTTGGGGTGTGCGCTGTTTAGGAAGAATAAGAGCTACTGGCAAAGTTACTTGGAGGGGTTAAGGAAGACTGCAAAGCAGGAGATTCACAGCGTTCTC AGGAAAAGCTATGATGAGCTTGGAAGGGACGAGAAGCGTATTTTTCTGGACATTGCCTGCTTTTTCAGAAGGAATTATTCAAAGTCGAGTGTGATTAAGA TGATGGAGGGTACCTATTACTCGGCGTATAGTCGGGTGGATGACTTGATCGATAAGGCTCTTTTGATATGTGATCAATCTAGCGACAACAATGGCGACCA AGGTAGCACTACTGATGACAGTGGTGGTCAAGATATCGAGGTTCATGATTTGTTGCACCAGATGGCTTGGAACATCATTGGCGAGGAACTGGAGCTTGGC AACCGCAGTCGGCTAGAGAATCCTGACGATATCCAGAAACTACTCACCACTCGAAAGGGGGAGAGGGCAACTGAAGGCATAAACTTGGACCTGTCTAAAG CAGAGGAGATGCATTTGGGGTCTGACGTCTTTGTCGGGATGGATCGTCTTAGATTGCTCAAATTCACATTGCCAGATTCATCTTCATCTCCTGATGAGGC ACTGACTGGAAAAATCCATCTCCCTGATTCCGGCCTTGACTCGCTCCCTCCTGCGTTAACAATGTTGTGGTGGGACGGCTTTCCTTCACCATCGCTGCCA TCGAAATTCTCTCCGCAGAACATTGTCGAGATTCGGATTCATCACAGCCCTCTCACACAATGCTGGGATGGAGTTCAGGAATTTGTGAACCTGAGGTGGT TTGACCTGTCCTACTGCGCAAACCTGACCGTTGTCCCGGATCTTTCGAGGGCCACTCATTTGGAATCACTCAAACTCGCGGGATGCAAGAGCATAGTAGA GCTTCCTTCCTTCGTCGAATATCTCGACAAGTTAGTCATTTTAGACGTCGGAGGCTGCAAAAACCTCGAGATCCTCCCGCCAAAACTCGGCTCCAAACAT CTCAAACATATCATACTATCCAACTGCTGCAAAATAAAACAATGCCCCGAGCTCGTCAGCAACTGGGACAACTTGGACTTGCATGGTACCCCGATCACGA CCCTGCCTTCTTCAATCTACACCATCAAACAAGCTCAAACGCTCTGCCTCCACGGGCAGAGCATCACCGCCTTCCCGGAGTTCTCCCCAACTCTAAAGAA ATTCCACTTGTGCCACACTGCTATAGAAAAATTGCCGCAGCAACAGAGCGATTCTCAGAAGTTAACCCTCCCGAGAATCGCTCAGCTTCATTTGATTGGG AACTCCAAACTCGTCGAATTTTCCAGGAACATCTGGAATATAGTGACGACGGATCTAGTCATCGTTGGTTCCCCAATACTCGAAATGTTACCTGAAATTC CTGGCAACTCCATTGCTGGAGACCTGAGGCTGGTGGTGGTGGAACATTGTGCGGCGTTCAAGCATTTGCCTTCCAGCATCAACAGCCTCAAGTCCTTGGA GGTAATGTCGCTAACCGGATCCGGTATCAGGGTGTTGCCTTCGTCTATACAGGAATTGGAGCAGCTCCGTATTTTGGATCTGTCTCATTGTAAGAGTTTG GAGTCACTTCCGAGCACGATGAGTATGCTTGGCAAGTTGTCACAAATTTACTTGGTGGGTTGCCTTAGCCTTCGTTCTCTGCCGGAACTTCCCCGGAATG TCAAGATGTTGGCTGCTGGCAATTGCAAATCGTTGCAAGCTGTTTCCAGCAGCAACTTCAGGAAGCTTCATTTCCGCCACCTCAGCTTCGTCGGTTGCAG CCAGCTGGACGAGAAGTTGCTTGACCGATTGATGGCTAAGTTGCATCTTCATGGTCCCACATCGCTCCAATCTCCGTACGGTGGGCGCATTGGTGAGAGA CACCCAACGACGGCTCTATATCCTGGGAGCGAGCTTCCGGAATGGTTTGCTTACAAAAGCATGGGGGATTCTGTAACGATCCCTTTGCCTAAAAACAGCA AGCGACTGAAGGGAATCTCTTTTGCCACCGTGTATGCTCTGGGAGCTTCCAACGACAAGGATACCGACATTCATCTCCACATGAAATGCCAATGCTTTGT GAAACTGGCAGGCGGTAGCCACGGATGCGTGAGCGATGATGCTGGTGGCGCTGTGGAGCCGTGGATTGTATGTATGAGCAACTTCCATGATTGTGTATCG ACGGACCATGTTTTCCTGTGGTCGGACCACAGACCTGATCAGCCCGCAACGTCGGGTGAAAGAGATGAAGATGGAGGAGGAGAAGCTTGGTACGTCAAAT ATTCTGGACAGGATCTTTCGTTCAGGTTTTCTACAGAAGTAACGCGTGGAGATGTAAAGCACTGTAAAATTAAGTGGTGTGGCGTCTCCCTGACGTTTCA TACCGTTGGTAATCTTTGA
AA sequence Show only first row Show all	>Lus10016029 pacid=23154448 polypeptide=Lus10016029 locus=Lus10016029.g ID=Lus10016029.BGIv1.0 annot-version=v1.0 MAALSEKKIRTFIDTMLGKGDSITELLSVLNRSAVSVIIFSERFADSPWCLDEVATISRSIKEFGHRVLPVFYNVDPSEVDGDTGSYAAMIERHDREKYP PAVKMKWRSALKEVVDKAGLTSCEIRLDSQLIKAIVDNVCKELVDMSPSLKSKNYVGMDSRVWEVERLLDINRSDDIRIVGLWGMSGIGKTTLAKALYQG FTNISKEDGGTKHHFVKDVNAKWKGRPDSLEGLQKELYATLLSEQDKNITCSDLETSYRRARLSRLKVFIVLDDVEHWSQLEQLLLGDVLNLTKLFALGS RIIVTTRNKKVLELAMARIYPVEKLNPQESLRLFSLYSFRREIPPEDRRYQSITAVGYCQGYPLALTVLGCALFRKNKSYWQSYLEGLRKTAKQEIHSVL RKSYDELGRDEKRIFLDIACFFRRNYSKSSVIKMMEGTYYSAYSRVDDLIDKALLICDQSSDNNGDQGSTTDDSGGQDIEVHDLLHQMAWNIIGEELELG NRSRLENPDDIQKLLTTRKGERATEGINLDLSKAEEMHLGSDVFVGMDRLRLLKFTLPDSSSSPDEALTGKIHLPDSGLDSLPPALTMLWWDGFPSPSLP SKFSPQNIVEIRIHHSPLTQCWDGVQEFVNLRWFDLSYCANLTVVPDLSRATHLESLKLAGCKSIVELPSFVEYLDKLVILDVGGCKNLEILPPKLGSKH LKHIILSNCCKIKQCPELVSNWDNLDLHGTPITTLPSSIYTIKQAQTLCLHGQSITAFPEFSPTLKKFHLCHTAIEKLPQQQSDSQKLTLPRIAQLHLIG NSKLVEFSRNIWNIVTTDLVIVGSPILEMLPEIPGNSIAGDLRLVVVEHCAAFKHLPSSINSLKSLEVMSLTGSGIRVLPSSIQELEQLRILDLSHCKSL ESLPSTMSMLGKLSQIYLVGCLSLRSLPELPRNVKMLAAGNCKSLQAVSSSNFRKLHFRHLSFVGCSQLDEKLLDRLMAKLHLHGPTSLQSPYGGRIGER HPTTALYPGSELPEWFAYKSMGDSVTIPLPKNSKRLKGISFATVYALGASNDKDTDIHLHMKCQCFVKLAGGSHGCVSDDAGGAVEPWIVCMSNFHDCVS TDHVFLWSDHRPDQPATSGERDEDGGGEAWYVKYSGQDLSFRFSTEVTRGDVKHCKIKWCGVSLTFHTVGNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Lus10005588 [exp]	2.8	0.7818
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	2.8	0.8230
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10027281 [exp]	5.0	0.7814
AT4G17250			unknown protein		Lus10004355 [exp]	5.2	0.7502
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Lus10007455 [exp]	5.5	0.7945
AT2G45910			U-box domain-containing protei...		Lus10016557 [exp]	5.5	0.8105
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10017418 [exp]	6.3	0.7456
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	8.4	0.7570
AT4G24290			MAC/Perforin domain-containing...		Lus10015324 [exp]	8.9	0.7534
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	13.0	0.7338

Compare expression of checked genes

Lus10016029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.