Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33610 391 / 3e-132 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) AT1G21700 157 / 5e-41 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3C (.1) AT2G47620 150 / 6e-40 CHB1, ATSWI3A SWITCH/sucrose nonfermenting 3A (.1) AT4G34430 114 / 8e-27 ATSWI3D, CHB3 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) AT3G07740 50 / 3e-06 HXA2, HXA02, HAC10, ATADA2A, ADA2A homolog of yeast ADA2 2A (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025165 [exp] 727 / 0 AT2G33610 422 / 3e-142 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Lus10032555 [exp] 156 / 1e-41 AT2G47620 371 / 3e-123 SWITCH/sucrose nonfermenting 3A (.1) Lus10043188 [exp] 154 / 1e-40 AT2G47620 382 / 4e-127 SWITCH/sucrose nonfermenting 3A (.1) Lus10040472 [exp] 155 / 3e-40 AT4G34430 694 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10023583 [exp] 150 / 1e-38 AT4G34430 704 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10026334 [exp] 144 / 1e-36 AT1G21700 556 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042329 [exp] 139 / 1e-34 AT4G34430 652 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Lus10029695 [exp] 133 / 6e-33 AT1G21700 666 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Lus10042734 [exp] 127 / 4e-31 AT1G21700 736 / 0.0 SWITCH/sucrose nonfermenting 3C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G004800 [exp] 439 / 1e-150 AT2G33610 435 / 3e-149 CHROMATIN REMODELING COMPLEX SUBUNIT B, switch subunit 3 (.1) Potri.015G100400 [exp] 170 / 2e-46 AT2G47620 395 / 7e-132 SWITCH/sucrose nonfermenting 3A (.1) Potri.002G080600 [exp] 146 / 2e-37 AT1G21700 679 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.009G114900 [exp] 146 / 3e-37 AT4G34430 727 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.005G180800 [exp] 144 / 9e-37 AT1G21700 692 / 0.0 SWITCH/sucrose nonfermenting 3C (.1) Potri.004G153300 [exp] 142 / 6e-36 AT4G34430 711 / 0.0 SWITCH/SUCROSE NONFERMENTING 3D, DNA-binding family protein (.1.2.3.4) Potri.006G017300 [exp] 44 / 0.0003 AT4G16420 640 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3) Potri.014G166300 [exp] 44 / 0.0003 AT3G07740 582 / 0.0 homolog of yeast ADA2 2A (.1.2.3.4) Potri.016G007600 [exp] 43 / 0.0005 AT4G16420 602 / 0.0 PROPORZ1, homolog of yeast ADA2 2B (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF04433 [flax] [poplar] SWIRM SWIRM domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016043 pacid=23154444 polypeptide=Lus10016043 locus=Lus10016043.g ID=Lus10016043.BGIv1.0 annot-version=v1.0 ATGGCTTCTGCAGAGCCAATTCCTCCTCCCACGGACACCGTTACCCCGCCGTCAACCAAGCCAACTCCCCTCCTCCCTCCTCCCCCCTCCGCCGTTGCCG AAGCTTCCGCAACTTCCCCCTCTCCAGTTACTCCCTCTGTCGCCGCCCCCTCCGATGCCGATTTGGTCCACATCCCTAGCTACTCCCGCTGGTTCTCCTG GGATGACATTCACGAATGCGAGGTTCGATTTCTCCCCGAGTTCTTCGATTCTCGCTCCCCTTCCAAGACACCTAAGCACTACCTCTACCTCAGAAACTCC ATCGTCAAGCAGTTCAGGCGGAATCCTTCCTCTAAGATCACCTTCACCGACGTCCGCAAGACCCTCGTCTCGGACGCCGGCTCAGTCCGCAGAGTCTTCG ATTTCTTGGACGCATGGGGTCTCATTAATTACTCCCCTCCTCCTTCTTTAGCCAAGCCTTTGAAGTGGGAAGACAACAAGGATGCCAAGGCCTCCGGCGG TACAGATCCCCGAGCAATGGCTTCCACCTCTGACGCATCTCCTCTCGTCAAGGAAACTTCCAAACAACGGCAATGTAGTGCATGCAAGTCCCCTTGCAGC ATCTCTTGCTTTACTTGCGACAAGTACGACATTACTCTTTGTGCGCGGTGCTATGTTCGAGGCAATTACAGGGTGGGAGTTACCAAGTCCGATTTCAGGC GAGTTGAGATCAGCGAAGAGTCGAATGCTGATTGGACAGACAAAGAGACGCTGCAGCTACTGGAAGCGGTCACGCACTATGGTGACGACTGGAAGAAGGT TGCACAGCATGTCTCTGGTAGAAGTGAGAAGGACTGCATCACCCATTTCATTAAGCTTCCTATGGGGGAACAGCTTGCTTGCTCTTCAGATACGGGAGGG GTTGGAAACAAGCAGAGCCAACCGAAAGATGATGATAACAATGCTGGATCCGGTGTTGAACATAGTAGCCCTAGTGAAAGGTTGTGCCTTTCTCCTCTTG CAGATGCTAGCAACCCAATCATGGCTCAGGCTGCTTTCTTATCCGCTTTGGCTGGTTCGAGGGTCGCTGAAGCTGCTGCTCGGGCAGCTCTAGCTGCAGT GTCCAAGGCGGGACAAGGAGAATCAAAGCCTAATATTAGAATTATTCATAAAGGAACCCAAGGCATCTTGAAATCCTCGGAAGAGGGTGATTCAGATGTA AAGCGAATGCAGAAGGAGAAGCTGAACGTGGGTGAAGAATTCTACCGAGTTGCAGAGGTGCGGCAGATGAAGGAGATAATAGAGAAGATTATTGGGTTCG AGGAAATGGATATGCAGTTAGAAAAGGAGTGGAAACAGATGGAGCAAGTGAGGGACATGTTCTTTGACCAGTTGAACTACTTGTGTCCTAATAAAACTTC AAGTCGGAGAAGCGGCAGAGAAGAAGAAGAAGCAGAAGCTGGCACAAGGGTGGCTTCACTTGAGACTTGA
AA sequence Show only first row Show all	>Lus10016043 pacid=23154444 polypeptide=Lus10016043 locus=Lus10016043.g ID=Lus10016043.BGIv1.0 annot-version=v1.0 MASAEPIPPPTDTVTPPSTKPTPLLPPPPSAVAEASATSPSPVTPSVAAPSDADLVHIPSYSRWFSWDDIHECEVRFLPEFFDSRSPSKTPKHYLYLRNS IVKQFRRNPSSKITFTDVRKTLVSDAGSVRRVFDFLDAWGLINYSPPPSLAKPLKWEDNKDAKASGGTDPRAMASTSDASPLVKETSKQRQCSACKSPCS ISCFTCDKYDITLCARCYVRGNYRVGVTKSDFRRVEISEESNADWTDKETLQLLEAVTHYGDDWKKVAQHVSGRSEKDCITHFIKLPMGEQLACSSDTGG VGNKQSQPKDDDNNAGSGVEHSSPSERLCLSPLADASNPIMAQAAFLSALAGSRVAEAAARAALAAVSKAGQGESKPNIRIIHKGTQGILKSSEEGDSDV KRMQKEKLNVGEEFYRVAEVRQMKEIIEKIIGFEEMDMQLEKEWKQMEQVRDMFFDQLNYLCPNKTSSRRSGREEEEAEAGTRVASLET

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33610		CHB2, ATSWI3B	CHROMATIN REMODELING COMPLEX S...		Lus10016043 [exp]	0	1
AT5G20170			RNA polymerase II transcriptio...		Lus10019427 [exp]	15.9	0.8218
AT1G75310		AUL1	auxilin-like 1, auxin-like 1 p...		Lus10033205 [exp]	16.1	0.8288
AT5G67610			Uncharacterized conserved prot...		Lus10019263 [exp]	20.3	0.8216
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10024504 [exp]	32.2	0.8210
AT2G26680			unknown protein		Lus10005721 [exp]	37.3	0.7332
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10032176 [exp]	45.4	0.8083
AT3G15080			Polynucleotidyl transferase, r...		Lus10000997 [exp]	47.7	0.7753
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	51.6	0.8095
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	51.8	0.8036
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10011401 [exp]	57.1	0.8066

Compare expression of checked genes

Lus10016043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.