Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53230 1443 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 1436 / 0 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT5G03340 1432 / 0 ATPase, AAA-type, CDC48 protein (.1) AT3G01610 423 / 5e-136 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT2G03670 409 / 4e-133 CDC48B cell division cycle 48B (.1) AT3G56690 263 / 8e-75 CIP111 Cam interacting protein 111 (.1) AT1G03000 259 / 9e-74 PEX6 peroxin 6 (.1) AT5G08470 238 / 8e-66 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G05910 232 / 1e-63 cell division cycle protein 48-related / CDC48-related (.1) AT5G19990 209 / 4e-60 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021441 [exp] 1537 / 0 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 1517 / 0 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 1515 / 0 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 1415 / 0 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 1340 / 0 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 768 / 0 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 439 / 4e-139 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10002639 [exp] 440 / 5e-137 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10039722 [exp] 421 / 3e-135 AT3G01610 754 / 0.0 embryo defective 1354, cell division cycle 48C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091600 [exp] 1461 / 0 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 1453 / 0 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 1422 / 0 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 1407 / 0 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 1276 / 0 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 428 / 9e-138 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 409 / 5e-133 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.014G133000 [exp] 257 / 5e-73 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.001G174100 [exp] 255 / 1e-71 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 251 / 1e-70 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0332 [flax] [poplar] AcetylDC-like PF02359 [flax] [poplar] CDC48_N Cell division protein 48 (CDC48), N-terminal domain CL0402 [flax] [poplar] Cdc48_2-like PF02933 [flax] [poplar] CDC48_2 Cell division protein 48 (CDC48), domain 2 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10016124 pacid=23171839 polypeptide=Lus10016124 locus=Lus10016124.g ID=Lus10016124.BGIv1.0 annot-version=v1.0 ATGGCGGACAAGGCTGAATCGTCAGATTCGAAATCGGGTAAGAGGGACTTCTCCACCGCGATTCTGGAGAGGAAGAAGTCTCCGAATCGGCTGGTAGTTG ATGAGGCGGTCAACGATGATAATTCCGTCGTCGCGATGCACCCTGACACCATGGAGAAGCTCCAGCTCTTCCGCGGCGATACGATTCTCATCAAGGGAAA GAAAAGGAAGGATACTATCTGCATTGCTCTGGCCGATGAGACATGTGATCAGCCTAAGATTAGGATGAACAAAGTTGTAAGGTCGAACTTGAGGGTGCGG CTTGGTGATGTTGTTTCGGTGCACCAGTGCCCGGATGTTAAGTACGGGAAGCGTGTCCACATACTGCCAATTGACGACACCATTGAAGGGGTTACTGGAA ACCTCTTTGATGCATATTTGAAGCCTTATTTCCTAGAGGCTTATCGCCCAGTGAGGAAAGGAGATTTCTTCCTTGTCAGAGGTGGCATGCGAAGCGTAGA GTTCAAGGTGATTGAAACTGACCCAGGTGATTACTGTGTTGTTGCCCCGGATACTGAAATTTTCTGTGAGGGAGAACCAGTTAGAAGGGAGGATGAGGAT AGGTTGGATGAGGTTGGCTATGACGATGTTGGTGGGGTTAGAAAGCAGATGGCTCAGATTCGTGAGTTGGTTGAGCTGCCCCTAAGGCATCCTCAGCTAT TCAAATCAATTGGTGTGAAGCCACCCAAAGGTATTCTGCTCTACGGGCCTCCTGGTTCTGGGAAGACCTTGATAGCCAGGGCTGTGGCTAATGAAACCGG TGCGTTCTTCTTCTGCATCAATGGACCTGAAATAATGTCCAAATTGGCTGGAGAGAGTGAGAGCAATCTCAGGAAGGCCTTTGAAGAGGCTGAGAAGAAT GCTCCTTCCATCATCTTCATTGATGAGATTGACTCCATTGCCCCCAAGCGTGAAAAGACAAACGGTGAAGTTGAAAGGCGTATTGTCTCGCAACTCTTGA CTCTCATGGATGGGCTTAAATCTCGTGCCCATGTGATTGTTATGGGTGCTACAAACCGTCCTAACAGCATTGACCCAGCTCTGAGAAGGTTTGGAAGGTT CGATAGGGAGATTGATATTGGTGTTCCTGATGAAGTTGGCCGTCTTGAGGTTCTTCGCATCCATACCAAGAATATGAAACTCTCTGATGAAGTTGACCTG GAAAGGATCTCAAAGGATACCCATGGATATGTTGGTGCTGATCTTGCTGCTCTATGCACTGAAGCTGCACTTCAGTGCATCAGAGAAAAGATGGATGTTA TAGATCTTGAAGATGATACAATTGATGCTGAGATATTAAACTCAATGGCTGTTACTAATGAGCACTTCCAAACCGCTCCTGGAACTAGCAATCCATCTGC TCTGCGTGAAACTGTTGTTGAAGTACCAAACTGTAGTTGGGAGGACATCGGTGGGCTCGAAAATGTTAAACGTGAACTTCAAGAGACTGTTCAATATCCA GTGGAGCACCCGGAGAAATTCGAGAAGTTTGGTATGTCGCCTTCAAAGGGGGTTCTGTTTTATGGCCCCCCTGGCTGTGGAAAGACCCTGTTGGCTAAGG CTATTGCCAATGAGTGCCAAGCAAACTTCATCAGCATCAAAGGTCCTGAGCTCCTAACTATGTGGTTCGGTGAGAGTGAAGCAAATGTACGAGAGATTTT TGACAAGGCTAGACAGTCTGCACCTTGTGTTCTTTTCTTCGATGAGCTCGACTCCATTGCTACTCAGGGCGGCGTTGGTGATGCCGGCGGTGCAGCCGAT CGTGTGCTGAACCAGCTTCTAACCGAAATGGATGGTATGTCCGCAAAGAAGACCGTCTTCATCATCGGGGCAACAAACAGACCCGACATCATTGATTCGG CACTCCTGAGGCCCGGCCGTCTTGACCAGCTCATCTACATTCCTCTCCCAGACGAGGATTCTCGCTACCAGATCTTCAAGGCTGCCTTGAGGAAGTCCCC ACTCGCTAAAGAGGTCGACTTGAGGGCACTCGCCAAGTACACTCAAGGCTTCAGTGGTGCTGATATCACCGAGATTTGCCAGCGTGCCTGCAAGTATGCC ATTCGGGAGAACATCGAGAAGGACATTGAAAAGGAGAGGAAGAGAGATGCGAACCCGGAAGCTATGGAGGAGGATGAGGAGGAGATTGCGGAGATCAAGG CTGCACACTTTGAGGAGTCTATGAAGTATGCCCGTCGCAGTGTGAGCGATGCTGATATCCGCAAGTACCAGGCTTTTGCCCAGACTCTGCAGCAGTCCAG GGGGTTCGGTTCCGAGTTTAGGTTCTCGGAGACTGCAGTCACCGTAGGAGCAACGGCAGCTGCTGATCCTTTCTCAACTTCAGCAGGTGGAGCCGATGAA GATGACTTGTATAGTTAG
AA sequence Show only first row Show all	>Lus10016124 pacid=23171839 polypeptide=Lus10016124 locus=Lus10016124.g ID=Lus10016124.BGIv1.0 annot-version=v1.0 MADKAESSDSKSGKRDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHPDTMEKLQLFRGDTILIKGKKRKDTICIALADETCDQPKIRMNKVVRSNLRVR LGDVVSVHQCPDVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETDPGDYCVVAPDTEIFCEGEPVRREDED RLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDEVDL ERISKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDDTIDAEILNSMAVTNEHFQTAPGTSNPSALRETVVEVPNCSWEDIGGLENVKRELQETVQYP VEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQGGVGDAGGAAD RVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRYQIFKAALRKSPLAKEVDLRALAKYTQGFSGADITEICQRACKYA IRENIEKDIEKERKRDANPEAMEEDEEEIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFSETAVTVGATAAADPFSTSAGGADE DDLYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016124 [exp]	0	1
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021442 [exp]	1.0	0.9246
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10001573 [exp]	1.7	0.8951
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10006321 [exp]	3.2	0.8834
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Lus10029363 [exp]	3.5	0.9073
AT2G43160			ENTH/VHS family protein (.1.2....		Lus10025527 [exp]	4.0	0.8815
AT1G15130			Endosomal targeting BRO1-like ...		Lus10034634 [exp]	4.5	0.8895
AT2G04620			Cation efflux family protein (...		Lus10013358 [exp]	4.6	0.8822
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10010933 [exp]	8.7	0.8631
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009680 [exp]	10.4	0.7879
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	11.5	0.8833

Compare expression of checked genes

Lus10016124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.