Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 195 / 4e-61 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 178 / 8e-55 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 175 / 3e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 160 / 2e-48 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 161 / 1e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 156 / 2e-46 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 155 / 3e-46 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 155 / 4e-46 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G26760 153 / 7e-45 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 151 / 1e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029371 [exp] 382 / 2e-135 AT1G52340 221 / 1e-71 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016176 [exp] 378 / 1e-133 AT3G51680 224 / 2e-72 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029370 [exp] 308 / 5e-106 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 298 / 6e-102 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 254 / 6e-85 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 247 / 9e-82 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 237 / 5e-78 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 231 / 7e-76 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10013595 [exp] 231 / 2e-75 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073800 [exp] 246 / 1e-81 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 241 / 1e-79 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 238 / 2e-78 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 233 / 2e-76 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 230 / 3e-75 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 225 / 3e-73 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 225 / 4e-73 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 222 / 5e-72 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 221 / 8e-72 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 213 / 2e-68 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016175 pacid=23142664 polypeptide=Lus10016175 locus=Lus10016175.g ID=Lus10016175.BGIv1.0 annot-version=v1.0 ATGGCGAAGAGATTACAAGGCAAAGTAGTGCTGATCACTGGCGGCGCCCGAGGCATCGGCGCCGCAGCAGCAACGCTCTTCTCCCAACACGGTGCCAAAG TCCTCATAGCTGACATCCGCTCCGAATCGGGCAGATCCGTGGCGAAGGAAATTGAATCGGAGTCGGGCCACCCCGTTTCGTACATCCAGTGCGACGTCAC GAGCGACGCAGACATGCGAAATGCGGTAGACGCCGCCATTTCGACTTATGGGAAGCTCGACATCATGTATAACAACGCCGGGATAGTCGGGGAGAAAGTC GGCCTGTCAGGGCAGGACATATCGTCGGTGGATCCCGCGGTCTTCCGGCAAGTGTTCGATGTGAACGTGTACGGATCATTCCTGGCGGCGAACCACGCCG CCAGGGTGATGGTCCCACAGAAGGGCGGGACCATACTGCTCACAGCCAGTGCAACGACCGTGAGCAATGGGAAAGGGCCTCATGTCTACGCTGCGTCGAA GCACGCGGTGGTGGGGCTGACGAAGAATCTGTGCGTGGAGCTGGGGAAATTCGGGATCCGAGTGAATTGTATTTCTGCGGACGGGGTGGCCACTCCGTCG GCCTTGGAGGTCACGGGAATAAGTGAAGCGGCGACGCTCGAGGCGGCATTCGCGGAAAAGGCGAACTTGAAGGGGAAGGTATTGAAGGCGGAGGATGTCG CCGAGGCAGCGTTGAATCTCGTGAGCGATGAGTCTAGGTATATTAGCGGGGTGAAGCGCCGACGCTCGAGGCGGCATTCGCGGAAAAGGCGAACTTGA
AA sequence Show only first row Show all	>Lus10016175 pacid=23142664 polypeptide=Lus10016175 locus=Lus10016175.g ID=Lus10016175.BGIv1.0 annot-version=v1.0 MAKRLQGKVVLITGGARGIGAAAATLFSQHGAKVLIADIRSESGRSVAKEIESESGHPVSYIQCDVTSDADMRNAVDAAISTYGKLDIMYNNAGIVGEKV GLSGQDISSVDPAVFRQVFDVNVYGSFLAANHAARVMVPQKGGTILLTASATTVSNGKGPHVYAASKHAVVGLTKNLCVELGKFGIRVNCISADGVATPS ALEVTGISEAATLEAAFAEKANLKGKVLKAEDVAEAALNLVSDESRYISGVKRRRSRRHSRKRRT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016175 [exp]	0	1
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036120 [exp]	4.9	0.9434
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10026138 [exp]	5.9	0.9279
AT1G30050			unknown protein		Lus10035609 [exp]	6.5	0.9602
AT3G03000			EF hand calcium-binding protei...		Lus10004539 [exp]	9.3	0.9595
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	11.4	0.9580
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Lus10032111 [exp]	12.3	0.8757
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10030287 [exp]	12.7	0.7754
					Lus10005830 [exp]	13.4	0.9579
AT1G04645			Plant self-incompatibility pro...		Lus10002219 [exp]	15.0	0.9579
AT2G22330		CYP79B3	"cytochrome P450, family 79, s...		Lus10042319 [exp]	16.1	0.8088

Compare expression of checked genes

Lus10016175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.