Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51680 203 / 3e-64 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 192 / 6e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 187 / 2e-58 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 185 / 6e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 174 / 1e-53 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 173 / 3e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 171 / 5e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 170 / 6e-52 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 169 / 1e-51 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 165 / 4e-50 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029371 [exp] 441 / 2e-158 AT1G52340 221 / 1e-71 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016175 [exp] 380 / 2e-134 AT3G51680 214 / 1e-68 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029370 [exp] 327 / 1e-113 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 313 / 9e-108 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 261 / 2e-87 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 254 / 9e-85 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 246 / 2e-81 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 242 / 4e-80 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016179 [exp] 239 / 4e-79 AT4G03140 228 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206500 [exp] 261 / 3e-87 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 252 / 5e-84 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 251 / 2e-83 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 249 / 1e-82 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 239 / 1e-78 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 236 / 1e-77 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 234 / 6e-77 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 234 / 8e-77 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 234 / 1e-76 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 229 / 7e-75 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016176 pacid=23142644 polypeptide=Lus10016176 locus=Lus10016176.g ID=Lus10016176.BGIv1.0 annot-version=v1.0 ATGGCCAAGAGATTACAAGGAAAAGTAGTGCTGATCACCGGCGGCGCCCGAGGCCTCGGCGCCGCAGCGGCAAGGCTCTTCTCCCAACACGGTGCCAAAG TCCTCATAGCCGACATCCGCTCCGAATTGGGCCGATCCGTGGCAAAGGAAATCGAATCGGAGTCGGGTCATCCCGTTTCGTACATCCAGTGCGACGTCAC GAGCGACGCCGACATGCGAAAAGCGGTCGATACCGCCGTTTCAACCCACGGGAGGCTCGACATCATGTACAACAACGCCGGGATAGTCGGGGAGAAGTTT GACCCGCCGGAATTGGACATATCGGCGGTAGATCCCACGGTCTTCCGGCAGGTGTTCGATGTGAACGTGTACGGATCGTTACTGGCGGCGAAGCACGCCG CCAGGGTGATGGTCCCGCAAAAGAGCGGGACCATACTGCTCACAGCCAGCGCGGCCACTGTGAGCAACGAGATATGCCCCCATGTTTACACTGCGTCGAA GCATGCAGTAGTGGGGGTGACGAAGAATTTGTGCGTGGAGCTGGGGAAATTCGGGATTCGGGTGAACTGTATTTCTCCGTCCGCGGTGGCTACTCCAGCG GCCTTGGAGGTAACGGGACTAGGTGACGCGGCAACGCTGGAGGCGGCGTACGCGGCAAAGGCGAACTTGAAAGGGAAGGTGTTGAAGGCGGAGGATGTGG CGGAGGCAGCTTTGACTCTCGTCAGCGACGAGTCTGGGTATATTAGCGGGGTGAATCTTGTGGTTGATGGCGGTAATTGTTTAATGAGCAGGTGA
AA sequence Show only first row Show all	>Lus10016176 pacid=23142644 polypeptide=Lus10016176 locus=Lus10016176.g ID=Lus10016176.BGIv1.0 annot-version=v1.0 MAKRLQGKVVLITGGARGLGAAAARLFSQHGAKVLIADIRSELGRSVAKEIESESGHPVSYIQCDVTSDADMRKAVDTAVSTHGRLDIMYNNAGIVGEKF DPPELDISAVDPTVFRQVFDVNVYGSLLAAKHAARVMVPQKSGTILLTASAATVSNEICPHVYTASKHAVVGVTKNLCVELGKFGIRVNCISPSAVATPA ALEVTGLGDAATLEAAYAAKANLKGKVLKAEDVAEAALTLVSDESGYISGVNLVVDGGNCLMSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10016176 [exp]	0	1
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10040275 [exp]	1.0	0.9656
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10004708 [exp]	2.4	0.9392
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10035635 [exp]	2.4	0.9142
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10000518 [exp]	3.2	0.9465
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Lus10022424 [exp]	7.1	0.9153
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028852 [exp]	7.8	0.8555
AT1G18060			unknown protein		Lus10017999 [exp]	14.1	0.9195
AT1G75460			ATP-dependent protease La (LON...		Lus10024294 [exp]	14.3	0.8922
AT3G02730		TRXF1, ATF1	thioredoxin F-type 1 (.1)		Lus10026999 [exp]	16.1	0.9130
AT3G10230		AtLCY, LYC	lycopene cyclase (.1.2)		Lus10038986 [exp]	16.4	0.8910

Compare expression of checked genes

Lus10016176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.