Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26770 203 / 4e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 202 / 3e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 195 / 2e-61 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 189 / 1e-58 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 187 / 3e-58 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 186 / 4e-58 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47140 180 / 7e-56 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 174 / 1e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 172 / 1e-52 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 167 / 9e-51 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029370 [exp] 434 / 8e-156 AT4G03140 217 / 3e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016176 [exp] 313 / 5e-108 AT3G51680 224 / 2e-72 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029371 [exp] 313 / 8e-108 AT1G52340 221 / 1e-71 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016175 [exp] 308 / 5e-106 AT3G51680 214 / 1e-68 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029368 [exp] 271 / 2e-91 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10034626 [exp] 268 / 4e-90 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016179 [exp] 267 / 8e-90 AT4G03140 228 / 1e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 265 / 1e-88 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 265 / 1e-88 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G206400 [exp] 268 / 3e-90 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 263 / 4e-88 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 263 / 5e-88 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 261 / 2e-87 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 261 / 3e-87 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 256 / 1e-85 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 252 / 8e-84 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 248 / 2e-82 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 240 / 5e-79 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 237 / 5e-78 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016177 pacid=23142698 polypeptide=Lus10016177 locus=Lus10016177.g ID=Lus10016177.BGIv1.0 annot-version=v1.0 ATGGCGAAAAGATTGCAAGGCAAAGTTGCCCTTATCACCGGCGGCGCCAGAGGCCTCGGAGCCGCCGTCGCCAGGCTGTTCGCCCAACACGGCGCCAAAG TCTTGATCGCCGACATCCAGCCCGAATTGGGCCAGTCTCTGTCCAATGAAATCGAATCCGAATCGGGGCAACTGGCTTGCTACATCCACTGTGACGTCAC CAGCGACTCGGACATGCAAAACGCAGTCGACACCGCCGTTTCGACCCACGGGAAGCTCGACATCATGTACAACAACGCCGGGGTGATCGGAGCAAAAAGT GTCGACAACTCGCCACAAGGTCACGAATTGAGTTCTATATCGTCGGTTGATAAGAAAGTGTTCCGTAACGTGTTTGATGTCAACGTGTACGGATCCTTAC TGGCTGGGAAGCACGCAGCTAGGGTAATGGTCCCACAAAAGAGTGGGACTATCCTGTTTACCAGCAGCTTTGTGACCGCCAGTCACGGGCTGACCGTGTA CAGTTACGTGGCGTCCAAGCACGCCGTGGTTGGGGTCATGAAGAACCTGGCTGTGGAGTTGGGCCCGTTTGGGATCCGGGTGAACTGCATTTCGCCGTAC GGGGTGGCGACTCCTATTGTTACAGAAGTGTTGGGGATCAACGAGGAGGCGTACGAGGGGATCTTCTCTGGAATGGGGAATTTGAAGGGGGTGGTGTGTA AGGATAAGGATATCGCTGAAGCGGCGTTGAACTTGGTGAGTGATGAGTCGAGGTATGTTAGTGGAGTTGATTTGATTGTTGATGGTGGTTATAACTTGAA GAGCGCTTGA
AA sequence Show only first row Show all	>Lus10016177 pacid=23142698 polypeptide=Lus10016177 locus=Lus10016177.g ID=Lus10016177.BGIv1.0 annot-version=v1.0 MAKRLQGKVALITGGARGLGAAVARLFAQHGAKVLIADIQPELGQSLSNEIESESGQLACYIHCDVTSDSDMQNAVDTAVSTHGKLDIMYNNAGVIGAKS VDNSPQGHELSSISSVDKKVFRNVFDVNVYGSLLAGKHAARVMVPQKSGTILFTSSFVTASHGLTVYSYVASKHAVVGVMKNLAVELGPFGIRVNCISPY GVATPIVTEVLGINEEAYEGIFSGMGNLKGVVCKDKDIAEAALNLVSDESRYVSGVDLIVDGGYNLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	0	1
AT5G25120		CYP71B11	"ytochrome p450, family 71, su...		Lus10013194 [exp]	3.9	0.8626
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	5.3	0.8802
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	6.0	0.8716
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	8.5	0.8399
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	9.0	0.7969
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	9.5	0.8524
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	11.0	0.8226
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10026237 [exp]	11.5	0.8289
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10001110 [exp]	14.1	0.8027
AT1G47670			Transmembrane amino acid trans...		Lus10025113 [exp]	17.9	0.7999

Compare expression of checked genes

Lus10016177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.