Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 184 / 2e-57 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 178 / 2e-54 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 177 / 3e-54 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 175 / 1e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 174 / 1e-53 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 174 / 2e-53 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 174 / 2e-53 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 163 / 1e-48 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 153 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 149 / 3e-43 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034626 [exp] 281 / 3e-95 AT2G47140 221 / 8e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035258 [exp] 279 / 3e-94 AT2G47140 214 / 4e-69 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10022562 [exp] 259 / 1e-86 AT3G29250 223 / 5e-72 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10013595 [exp] 249 / 1e-82 AT2G47140 224 / 3e-73 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010544 [exp] 248 / 2e-82 AT3G51680 216 / 2e-69 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021257 [exp] 248 / 4e-82 AT2G47140 222 / 3e-72 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004908 [exp] 247 / 8e-82 AT3G51680 209 / 1e-66 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 244 / 2e-80 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016177 [exp] 238 / 4e-78 AT3G26770 219 / 1e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G073900 [exp] 236 / 1e-77 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 229 / 8e-75 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 228 / 5e-74 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 226 / 1e-73 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 222 / 8e-72 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 218 / 3e-70 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 218 / 3e-70 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073700 [exp] 213 / 2e-68 AT1G52340 242 / 1e-79 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 211 / 1e-67 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206900 [exp] 207 / 2e-66 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016178 pacid=23142703 polypeptide=Lus10016178 locus=Lus10016178.g ID=Lus10016178.BGIv1.0 annot-version=v1.0 ATGGCAGGAGCTCCCTTGTCGCATCCCTTCTCCCAAAGATTACAAGGAAAGGTGGCCATAATAACCGGCGGCGCTAGCGGAATCGGCGCCGGCACGGCGA GACTGTTTGCCAAGCACGGCGCCAAAGTCATAATAGCCGACGTCCAACCCGAGCTGGGCCGCTCCGTCGTGGAAGAAATCAACTCGTCAAACTCGTCCAA CCCAGCCACCTTCGTCCATTGCGACGTCAGCAACGAGTCGGACGTCCAGAGCGCAGTAGACGGCGCCGTTTCGAGCTACCGGAAGCTCGACATCATGTAC AGCAACGCCGCCGTGGCAGGGAATCCGCAAAACTTCAAAATTACCTCGCTGGACTCAAGTGACCTTAACAGGGTGATGGCAATCAATATGAACGGCGCGT TCTACTGCGCCAAGCACGCTGCAAGGGTGATGATCACGAACCAAAGTAAGAAGGGGACAATTCTCTTCACCTCGAGCCGGGCCACGGAGTCGTTCGGGAT CGCAGGGAACCCGTACACAGCGTCGAAGGCGGCGGTGGTGGGGCTGATGAGGAACCTGGCGGTGGAGCTGGGAGAGTACGGGATACGGGTGAACGCGGTC TCCCCCGGCGGGATCGCTACTCCGATGGCGGTTACTGCGTTCGGTGGAACGGAGGAGGACACGGCGGCGATACAGAAGATGCTTGATGCGAAGGCGGCGC TGAAGACGGTGGTTCTGGGAGTGGACGATATTGCGGAGGCGGTGTTGTTTTTGGTGAGTGACGAGGCAAAGTTCGTGACCGGGGTTGATCTTTCCGTTGA CGGTGGGTTTTCTTGGAAGGCCGCCTAG
AA sequence Show only first row Show all	>Lus10016178 pacid=23142703 polypeptide=Lus10016178 locus=Lus10016178.g ID=Lus10016178.BGIv1.0 annot-version=v1.0 MAGAPLSHPFSQRLQGKVAIITGGASGIGAGTARLFAKHGAKVIIADVQPELGRSVVEEINSSNSSNPATFVHCDVSNESDVQSAVDGAVSSYRKLDIMY SNAAVAGNPQNFKITSLDSSDLNRVMAINMNGAFYCAKHAARVMITNQSKKGTILFTSSRATESFGIAGNPYTASKAAVVGLMRNLAVELGEYGIRVNAV SPGGIATPMAVTAFGGTEEDTAAIQKMLDAKAALKTVVLGVDDIAEAVLFLVSDEAKFVTGVDLSVDGGFSWKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016178 [exp]	0	1
AT2G38870			Serine protease inhibitor, pot...		Lus10018783 [exp]	1.7	0.9857
AT2G42350			RING/U-box superfamily protein...		Lus10005104 [exp]	3.7	0.9752
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	4.6	0.9578
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10026094 [exp]	5.7	0.9635
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	5.7	0.9614
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10005358 [exp]	8.4	0.9678
AT2G42360			RING/U-box superfamily protein...		Lus10005105 [exp]	12.6	0.9709
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10030931 [exp]	14.1	0.9693
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021455 [exp]	14.8	0.9693
					Lus10030774 [exp]	15.7	0.9493

Compare expression of checked genes

Lus10016178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.