Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 143 / 1e-42 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 119 / 3e-33 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 117 / 4e-32 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT3G23230 102 / 1e-27 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT2G33710 99 / 1e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G13330 98 / 3e-25 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G23240 98 / 4e-25 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G43410 94 / 2e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 96 / 3e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 96 / 5e-24 AP2_ERF ERF104 ethylene response factor 104 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029334 [exp] 270 / 7e-93 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 262 / 1e-89 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 251 / 1e-85 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 247 / 1e-83 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 233 / 2e-78 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10029314 [exp] 171 / 8e-54 AT2G44840 139 / 6e-41 ethylene-responsive element binding factor 13 (.1) Lus10016227 [exp] 171 / 1e-53 AT2G44840 134 / 3e-39 ethylene-responsive element binding factor 13 (.1) Lus10004011 [exp] 163 / 1e-50 AT2G44840 132 / 2e-38 ethylene-responsive element binding factor 13 (.1) Lus10030261 [exp] 160 / 3e-49 AT2G44840 125 / 1e-35 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 169 / 7e-53 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 154 / 4e-47 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 153 / 4e-47 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 148 / 1e-44 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 127 / 6e-38 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 128 / 1e-36 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 125 / 3e-35 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 122 / 3e-34 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 120 / 4e-33 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 108 / 9e-30 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10016209 pacid=23142704 polypeptide=Lus10016209 locus=Lus10016209.g ID=Lus10016209.BGIv1.0 annot-version=v1.0 ATGATGTCTACCCAGATTGAAGCTCTACAATCCATCCGCAACCACCTTTTCGACGACGATTCGGAATCGGGACTGATCACCTCCAATGCGACGTCGTTTT GTGCCGAGTTTCGGAGCTTCAGCACGCTCCTCGAGGCCGATAACTGGAGCGACATTCTGTCCCAGTTGGCCGATGATGCTTCGACTGTACAAGTAGTGGA TAATGACGTGGCGTTGCCTAAGAAGGCGGGTTACAAGGGAGTGAGGAGACGGCCGTGGGGGAAATACGCGGCGGAGATTAGAGATCCAAAGCGAAACGGC GCTAGGCTATGGTTGGGGACTTACGAGACTCCTGAGGATGCGGCTCTTGCTTACGATAGAGTCGCTTTCCAGATGAGGGGAGCTAGGGCTAAGCTCAACT TCCCGCATCTGGTGGGATCTAATGATTATGAGCCCGTTAGAGTGACTAACAAGAAACGTAACTCGCCGGAGCCATCATCCGCCGGGGCCTCATCGTCGGG ATCGGGAGCTGAATCTCCAAAGGCTAAACGAAGAATGAGTTTGCTGCTTGAGTCTTATGTCGAAGAGGAGTGTGGGACCAGTCAAATGCCATTTGGCAGT GAACTATCAGCTAGTCAATAG
AA sequence Show only first row Show all	>Lus10016209 pacid=23142704 polypeptide=Lus10016209 locus=Lus10016209.g ID=Lus10016209.BGIv1.0 annot-version=v1.0 MMSTQIEALQSIRNHLFDDDSESGLITSNATSFCAEFRSFSTLLEADNWSDILSQLADDASTVQVVDNDVALPKKAGYKGVRRRPWGKYAAEIRDPKRNG ARLWLGTYETPEDAALAYDRVAFQMRGARAKLNFPHLVGSNDYEPVRVTNKKRNSPEPSSAGASSSGSGAESPKAKRRMSLLLESYVEEECGTSQMPFGS ELSASQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016209 [exp]	0	1
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10038891 [exp]	8.8	0.6990
AT5G65750			2-oxoglutarate dehydrogenase, ...		Lus10029463 [exp]	15.3	0.6427
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10000319 [exp]	17.1	0.6939
AT1G24420			HXXXD-type acyl-transferase fa...		Lus10036077 [exp]	44.5	0.6228
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	74.9	0.5851
AT1G35710			Protein kinase family protein ...		Lus10002293 [exp]	75.1	0.5466
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	78.6	0.5831
AT4G15050			Protein of Unknown Function (D...		Lus10002231 [exp]	102.4	0.5462
AT2G29490		GST19, ATGSTU1	GLUTATHIONE S-TRANSFERASE 19, ...		Lus10007896 [exp]	105.9	0.5568
AT5G59790			Domain of unknown function (DU...		Lus10030328 [exp]	109.5	0.5074

Compare expression of checked genes

Lus10016209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.