Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 147 / 5e-44 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 120 / 2e-33 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 119 / 1e-32 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G33710 103 / 3e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G23230 99 / 2e-26 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT5G13330 100 / 6e-26 AP2_ERF RAP2.6L related to AP2 6l (.1) AT3G23240 99 / 2e-25 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G51190 98 / 5e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G43410 95 / 6e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 97 / 2e-24 AP2_ERF ERF104 ethylene response factor 104 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029333 [exp] 269 / 3e-92 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 241 / 3e-81 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 233 / 3e-78 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 221 / 3e-73 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 207 / 7e-68 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10029314 [exp] 159 / 4e-49 AT2G44840 139 / 6e-41 ethylene-responsive element binding factor 13 (.1) Lus10016227 [exp] 154 / 4e-47 AT2G44840 134 / 3e-39 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 154 / 6e-47 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029331 [exp] 154 / 1e-46 AT2G44840 147 / 4e-44 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 155 / 2e-47 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 150 / 7e-46 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 145 / 3e-43 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.001G079900 [exp] 134 / 2e-38 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.014G046800 [exp] 129 / 4e-38 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 131 / 1e-37 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.014G046900 [exp] 127 / 3e-36 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G081200 [exp] 122 / 1e-33 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 120 / 4e-33 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 112 / 6e-31 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10016211 pacid=23142678 polypeptide=Lus10016211 locus=Lus10016211.g ID=Lus10016211.BGIv1.0 annot-version=v1.0 ATGTCTACCCAGATTGAAGCCCTTGAATCCATTTGCAACCACCTTTTCAGCGACGATTCCGAATCTGCTTCACACACCAGCTCCGATGCAACGTCCTCGT TTTACTCCGAGTGCCAGAGCTTCAGCACGCTCCTCGAGGCTGACAGCTGGAGCGATATTTTCTCCCGGCTCGATGATGAAGAAACTTCTACTAATTACAA GCCACTACCAACGGTAGTGGTGTTGCCGAAGAAGGCGAATTACAAGGGAGTCAGGAGACGGCCGTGGGGGAAATACGCGGCCGAGATCAGGGACCCGAAG CGAACCGGTGCTAGGATATGGTTGGGGACTTACGAGACTCCTGAGGATGTGGCTCTCGCTTACGATAGAGCGGCTTTCCAGATGAGGGGAGCTAAGGCTA AGCTCAACTTCCCGCATCTGGTGGGGTCTACTGAATACGAGCCTGTTAGGGTGACGAACAAGAAACGTGACTCGACGGAGCCATCATCCTCCGGGTCCTC GTCGTCGGGATCGGGAACTGAATCTCCAAAGGCTAAACGAAGAATGAGTTTGGTTGACTCGTCGTCCTACGTGGAAGAGGAGTGGGACCAGACCTATTTG GTTAGTCAAATGCCATTTGGCAGTGAGCTATTGGGCAGTCAATGTAATGTGTAG
AA sequence Show only first row Show all	>Lus10016211 pacid=23142678 polypeptide=Lus10016211 locus=Lus10016211.g ID=Lus10016211.BGIv1.0 annot-version=v1.0 MSTQIEALESICNHLFSDDSESASHTSSDATSSFYSECQSFSTLLEADSWSDIFSRLDDEETSTNYKPLPTVVVLPKKANYKGVRRRPWGKYAAEIRDPK RTGARIWLGTYETPEDVALAYDRAAFQMRGAKAKLNFPHLVGSTEYEPVRVTNKKRDSTEPSSSGSSSSGSGTESPKAKRRMSLVDSSSYVEEEWDQTYL VSQMPFGSELLGSQCNV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016211 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016210 [exp]	1.7	0.8782
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10004443 [exp]	2.4	0.9054
AT4G13230			Late embryogenesis abundant pr...		Lus10038156 [exp]	2.4	0.8475
AT3G29250		AtSDR4	short-chain dehydrogenase redu...		Lus10022562 [exp]	2.6	0.9315
AT3G52360			unknown protein		Lus10029348 [exp]	4.9	0.8351
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10016177 [exp]	8.5	0.8399
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10012767 [exp]	16.4	0.8774
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10027006 [exp]	17.9	0.7514
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	19.1	0.8118
AT2G41705			camphor resistance CrcB family...		Lus10025621 [exp]	20.7	0.8348

Compare expression of checked genes

Lus10016211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.