Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 137 / 5e-41 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47220 112 / 7e-31 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 112 / 8e-31 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT3G23230 98 / 2e-26 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1) AT3G23240 97 / 3e-25 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1) AT5G43410 94 / 6e-25 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 94 / 7e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13330 93 / 9e-24 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G47230 94 / 1e-23 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT2G33710 93 / 1e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029319 [exp] 214 / 5e-72 AT2G44840 142 / 6e-43 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 173 / 4e-55 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029318 [exp] 169 / 2e-53 AT2G44840 140 / 1e-41 ethylene-responsive element binding factor 13 (.1) Lus10016212 [exp] 166 / 6e-52 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10029331 [exp] 163 / 7e-51 AT2G44840 147 / 4e-44 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 149 / 6e-46 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 149 / 1e-45 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 149 / 2e-45 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 148 / 2e-45 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046700 [exp] 142 / 7e-43 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 139 / 5e-42 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046600 [exp] 136 / 2e-40 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 126 / 8e-38 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.014G046900 [exp] 119 / 7e-34 AT2G44840 164 / 2e-50 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 118 / 3e-33 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 116 / 3e-32 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 115 / 1e-31 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 114 / 1e-31 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.004G051700 [exp] 108 / 3e-30 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10016223 pacid=23142648 polypeptide=Lus10016223 locus=Lus10016223.g ID=Lus10016223.BGIv1.0 annot-version=v1.0 ATGGACGATTCTTTTTCTTCTTCATCATCATCAGATCCTGCAGCATTTCTGGATTCCATCCATCACTTGATTCTTTCAAAAGACCTTGACGACGTCGTCC TCGCCACTGCTACTACTACTACTACTACTCCTCCTTCTTCTTCTACTACCGTCCCAGCCGTTGAAGAGAAGAGATCTGCAGGGATAAGTACGTCCACGTG GCAGTTCAAGGGGGTCAGGAGGCGTCCGTGGGGGAAGTACGCTGCCGAGATAAGGGATCCGAAGCGAAACGGTGCTAGGATATGGTTGGGGACTTACGAG TGTCCGGAAGATGCGGCTTTGGCTTACGACAGAGCTGCTTTTGAGATGCGGGGAGCTAAGGCTAAGCTCAATTTTCCGCATCTGGTTGGGTCTGCTGAGT ACCAGCCAGTTCGGGTTACGAATGTTAAGAAGCGGGCGGTTGATGATGAAGATCGGACTGGCGAGGCGAATGATCCCGAGTTGAAGCGGGTCAAGCCGGC GGATTTCCAAACTTGA
AA sequence Show only first row Show all	>Lus10016223 pacid=23142648 polypeptide=Lus10016223 locus=Lus10016223.g ID=Lus10016223.BGIv1.0 annot-version=v1.0 MDDSFSSSSSSDPAAFLDSIHHLILSKDLDDVVLATATTTTTTPPSSSTTVPAVEEKRSAGISTSTWQFKGVRRRPWGKYAAEIRDPKRNGARIWLGTYE CPEDAALAYDRAAFEMRGAKAKLNFPHLVGSAEYQPVRVTNVKKRAVDDEDRTGEANDPELKRVKPADFQT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016223 [exp]	0	1
AT4G25150			HAD superfamily, subfamily III...		Lus10006849 [exp]	1.0	0.9668
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	1.7	0.9555
					Lus10012313 [exp]	2.2	0.9450
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10012312 [exp]	3.5	0.9612
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	3.9	0.9280
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	7.7	0.9532
					Lus10008233 [exp]	8.8	0.9371
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	9.8	0.9397
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012011 [exp]	10.4	0.9386
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032347 [exp]	11.5	0.9396

Compare expression of checked genes

Lus10016223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.