Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47520 55 / 3e-09 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT3G14230 55 / 8e-09 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT2G33710 53 / 2e-08 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G16770 53 / 3e-08 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT1G72360 52 / 3e-08 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G50080 50 / 3e-07 AP2_ERF ERF110 ethylene response factor 110 (.1) AT5G61890 49 / 5e-07 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G19790 49 / 6e-07 AP2_ERF RAP2.11 related to AP2 11 (.1) AT2G44840 49 / 7e-07 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G61600 49 / 7e-07 AP2_ERF ERF104 ethylene response factor 104 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029298 [exp] 102 / 4e-25 AT2G29070 195 / 7e-59 Ubiquitin fusion degradation UFD1 family protein (.1.2) Lus10005281 [exp] 54 / 2e-08 AT4G18450 118 / 1e-31 Integrase-type DNA-binding superfamily protein (.1) Lus10037448 [exp] 54 / 2e-08 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10013764 [exp] 54 / 2e-08 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10021873 [exp] 53 / 2e-08 AT3G23230 143 / 4e-44 Integrase-type DNA-binding superfamily protein (.1) Lus10013186 [exp] 54 / 3e-08 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10039171 [exp] 53 / 4e-08 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10011830 [exp] 52 / 4e-08 AT3G23230 134 / 4e-41 Integrase-type DNA-binding superfamily protein (.1) Lus10013958 [exp] 52 / 6e-08 AT4G18450 116 / 8e-31 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G163700 [exp] 56 / 5e-09 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.001G004700 [exp] 55 / 6e-09 AT5G19790 112 / 1e-29 related to AP2 11 (.1) Potri.002G029400 [exp] 54 / 1e-08 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.010G072400 [exp] 52 / 3e-08 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.005G087200 [exp] 53 / 4e-08 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.008G091300 [exp] 53 / 6e-08 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.013G045200 [exp] 52 / 6e-08 AT3G23240 167 / 5e-52 ethylene response factor 1 (.1) Potri.007G076800 [exp] 52 / 7e-08 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.003G071700 [exp] 52 / 8e-08 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G453100 [exp] 52 / 1e-07 AT5G19790 71 / 5e-14 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10016245 pacid=23142730 polypeptide=Lus10016245 locus=Lus10016245.g ID=Lus10016245.BGIv1.0 annot-version=v1.0 ATGCCAGAGGCATCCAATTCTTGTGGCGGAACTGATCCTTCAGGTACTAGTTCCAACCTTGACTTTTGGTACAATTTGTACTTTGGCAAGGAAGTCGACG CCTCGAAGCAGGAGGGTGTTCAGCAGGTGGCGTCTGGTTCGAATTTGGAGGCTGATTGGGGATATGTGTTCGATGATTTGCAAAAGGGTAAGGAGAGAAG GAGGAGGAAGAGGGATTATAGCCATGGAAGCGGGGTGAATAGTGCAAGTGATCTGTCAGAAGCTCTGTCTTCCATTTCTGCAGCTCTGAGTCTCTCGTCT TCCGATTCTAGCCGAAAGGGCGATTATAGCGAGAAGGGAGAAGATGAGTCTGGTTTGAAGATTTTAGGACTAGCGAGAATGGGAAGGATAAGGATGATTG GACCATGCAGCAGCAGTGGTTTCGGAGCCAAATCTTCTCAGGACAGAAGAACAGGGAAGTCGAAATCAAAGTGCAGATACATAGGAGTAAGGCAAAGGCC CTCGGGGAAGTGGGCTGCTGAAATGAGAGAGGAAGCGAAGAGTGGCGGATGTCGAACTTGGTTAGGAACTTACGATACTGCAGAAGAAGCCGCAATGGCT TACGATAGAGCGGCTGCATCATCTCAGTTTGGTCATGTCGGGAAGATCAAACTCAACTTCCCAGATCTCCAGTATGGATCCTCCTAA
AA sequence Show only first row Show all	>Lus10016245 pacid=23142730 polypeptide=Lus10016245 locus=Lus10016245.g ID=Lus10016245.BGIv1.0 annot-version=v1.0 MPEASNSCGGTDPSGTSSNLDFWYNLYFGKEVDASKQEGVQQVASGSNLEADWGYVFDDLQKGKERRRRKRDYSHGSGVNSASDLSEALSSISAALSLSS SDSSRKGDYSEKGEDESGLKILGLARMGRIRMIGPCSSSGFGAKSSQDRRTGKSKSKCRYIGVRQRPSGKWAAEMREEAKSGGCRTWLGTYDTAEEAAMA YDRAAASSQFGHVGKIKLNFPDLQYGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33710	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016245 [exp]	0	1
AT4G28450			nucleotide binding;protein bin...		Lus10015673 [exp]	16.5	0.5656
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Lus10036901 [exp]	17.0	0.5442
AT2G34930			disease resistance family prot...		Lus10002753 [exp]	21.4	0.5112
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Lus10026447 [exp]	29.4	0.5351
AT1G74770			zinc ion binding (.1)		Lus10008628 [exp]	40.3	0.4507
AT5G49610			F-box family protein (.1)		Lus10037619 [exp]	66.1	0.4647
					Lus10031954 [exp]	155.2	0.4080
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10003752 [exp]	229.4	0.3797

Compare expression of checked genes

Lus10016245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.