Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14460 313 / 4e-88 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G14470 239 / 1e-64 NB-ARC domain-containing disease resistance protein (.1) AT1G53350 110 / 4e-24 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 109 / 5e-24 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT3G50950 109 / 5e-24 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59620 108 / 9e-24 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46530 106 / 4e-23 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 105 / 7e-23 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27190 105 / 8e-23 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 103 / 3e-22 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 1137 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002737 [exp] 959 / 0 AT3G14460 167 / 7e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002736 [exp] 720 / 0 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 620 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10024173 [exp] 523 / 1e-164 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 397 / 4e-119 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039548 [exp] 298 / 1e-90 AT3G14460 164 / 6e-44 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 284 / 3e-78 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 283 / 4e-78 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137101 [exp] 639 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 534 / 7e-169 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 521 / 1e-163 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 511 / 7e-159 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 510 / 2e-158 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 506 / 2e-157 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 481 / 1e-149 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 476 / 1e-147 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126306 [exp] 475 / 4e-146 AT3G14470 585 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 474 / 2e-145 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10016316 pacid=23161838 polypeptide=Lus10016316 locus=Lus10016316.g ID=Lus10016316.BGIv1.0 annot-version=v1.0 ATGTTTACGGTGCGGCCTTCAAGTGATTTTGCTCGCTTGATCAAGTCCCGCAAGGTTGATGAAGGACTGCTGAAGAAGTTGATTGCGGCGATGACAACTA TTAATCAGCTTATTGACAATGCATCGGAGAAGCAGCTTACTGATGATGCAATCAGAAACTGGGTTGCTGACCTTAAAGATGCTGCCTATGATGCCGATGA CTTGGTTGATGAGCTTGGCTATGAACAACTGCGGTCACTGGCTGAATCTTCATCCAAAACTACCACAGGAAAGATGATAAGTTATATAAACAATCGTAAC CCTTTCAAGGATGGGATTAATGGAAAGCTGAAGAAGCTTCTTGAGCGGCTTGATGCCGTGATAAAACTGAAGGATGTCCACGGGTTGAGTTTAGATAGTG GAGGGAAACAGTCGTCGGTTAAAACTACTGCAGCTTCTCATGTGAATGAATCTTGTGTTTATGGCAGGGAAGGTGATAAGGAAGCTATTATGAAGTTGCT TCTCTTGAATGACCAAACAAGTGATGAGTTAGGTGTCATTGTGATCGTGGGAACTGGTGGTGCGGGTAAAACTGCACTTTCTAAGATGATATACAATGAT AGCAAGGTTCAAGAGCACTTTCAACTAAATGCTTGGATATGTGTTTCGGAGAAGTTTGATGCTAACAGAATTACAAAGCACATCCTTGAGGGGCTTAGCG GTAAGGCGATTGATAATCGTACTTTAGATCAGCTACAAATAGAGCTTAAAGGAAGATTGACACAGAAAAAGTTCCTTCTAATTCTAGATGATTTGTGGAA TGAGAATGATGGTGATTGGGATTTACTACAAACACCTCTCAAACATGGTGTAAAAGGAAGTAAGATTATAGTTACAACACGGCATCCGAATGCAGCATCA GCACTGCCAACTAGTGAGACGTTTCATTTAAGCCCCTTGACAAATGATGATTGCTGGACGTTGTTCTCAAACTGTGCCTCTGTTGATGGAAATTTAAGTG CAAGTCCAGAGCTGGAATCGGTTGGCAGAGAACTCATGGAGAAATGCCAGGGTCTACCTTTGTCTGCAAAAATATTAGGAGCTCTACTGCGCTCTGAACA GGATGCTGAGAAATGGGGGAATATACTGAGGAGTACTCTATGGAATCTCCAAGACAAGATTCTTCCTGCTCTGATTTTGAGCTATTATTATCTTCCATCA TATTTGAAACCATGCTTTGCTTACTGTGCAATATTTCCAAGAGATTATGCATTTGAAAGGGACGAACTTGTGGCAATCTGGTGGAATGTTGATTACAAAT CGATTGACAATGATGTGCTCAATGGTCTTTTGAGTTCACTTAGCAACTTACATGTACTGTCCTTCTACGGGTACAAGTTAGTCGAGTTGCCTATTTCAAT TGGTGGCTTAAAACACTTGCGGTATTTGAATCTCTCACTGACTTGTGTAAAAGAGTTGCCAGCAACAATCTGCATCCTTTACAATCTACAGATTTTAATT ATGCAGTCCTGCAAGGAGCTTGAAGTATTGCCCGACTCGATTGGCAAGTTGAAGCAATTAAAACATCTAGATCTCTGCCAAACAGCAGTTGGAAGGTTGC CGGACTCTGTGGTACTGTTAAACAACTTGTATCATCTGGACCTTACAGATACAAAATTGCAAGAGATGCCATTGCAAATAGGTAAACTGACAAAACTTCA GTTCTTAACTGATTTTGTTGTGGGGAGTCACAGTGGTTCTACGATCAAGGAGTTGGAGGAGCTTCATCATCTCCGAGAAACACTCCGTATTTGGAATCTT CAAAACGTTGAAGATTCGGTAGATACACTTGCAGCAGTTTTGAAGACTAAGAAGCACCTTAGGAGGTTAGAGTTAAGGTGGGATGGTGATGCTGATGACT CATCACATGAAGTAATGCTAATGGACAAGTTGCAACCATATGTGCAGTTGAATAGCTTGAAGATTGATGGGTATAGAGGAACAACATTTCCACCATGGTT TGGGGATTCTACATTTACAAATATAGTTGCTATGGAACTCTCAGGGTGTAAGAACTGCTACTGCTTGCCCCCACTTGGACAGTTGGTGTCTCTAGAAAAG CTATCTATCAAAGCATTTGACAATATACGAACTGTGGGTGTGGAGTTTTGTGGGAGTGCCACATCCACAGAGAAGCCATTTAGATCTCTCAAAACGTTGG AGTTTGAAAACATGCCAGAATGGGAGGAATGGACTCCTGTGGTAGAAAATGACGGTGGAAATTACCCTCTTCTCGTGGAGCTTTACTTGACTGATTGTCC CAAACTGAAGCAAACGCTACCTAGCAACCTTCCTTCATTAAAAACACTTCGGTTAATGGGATGCCAGCTTCTTCGAGTTGCTTCACTTCCAAGTAATTCT GCAGCTTTTAAAATGGAAGTGAGGGATACTTTTCGTAAGGTACTGCTCGAGACATCAACTGAGGGGATGCATTCTGTTCATGTCACTGGGTGTGGCTCCG AAAACGCAGGAACAGATGAAATGGAGCCAGTCCATGGCCTTAGTGCCACTTTAGAAGAGATTGAGATTGCAAAATGCATTTCACTCAGCTGCTTCCCTCT CGATTTGTTCCCCAAATTGAAAAGTCTTTCTATCGTGAACTGTCAAAGCCTGGAATCTCTGTCAAGTAAAGAGGTCATTGAGGAGGATTTGGCTTCTCTG CGCTCTTTGAGAATTTCTGAGTGCCCGAAATTTGTCTCATTTCCAACAGGAGGGTTGCCTGCCCCAGATTTGACTGATCTTGTTTTATTGACATGCTCAA ATCTGACTTATCTACCAGAATATATAAACGAGCTTCCATCCCTTGTGGAGTTGACAGTGGGTCACTGTCCTGAAATCGAGTTTTTCCCTGAAGGTGGTTT GCCTTCCAAATTAGAGAAACTGGAGATCTGTGATTGTGATAAACTCATAGCTGAGCATATGCAATGGAACTTGCAGGCACTCCCCTCTCTTTTTCACTTC AGTATTGATTCATACGAAGGACTGGAATCTTTCCCTCACGAGACACTGCTCCCTTCCACGCTCACAACACTGTCGATTTTGAGCATTCAAAATCTGAAGT CTCTGGATAACAAAGGGATCCAACACTTAACTGCTCTTAAGGAGTTGAAGATCAGTGCTTGCCGGAGTTTGGAATCATTTCCCATAGGGAATTGGTTTCC CACTTTGGAATCACTCGAGATTAATAGCTGCGACAAACTCATAGCCGGTCGATCACAATGGAACATACAGGCAATGACGTCTCTCTTGCACTTGAAATTG TATGAAAATGAAGAAGTTGAATCATTTACAGGGGAGATGCTGCTACCTTCCTCCCTAATCTCCCTTGACATATGGGATCTGTATGGTCTGAAATCACTGG AAGGACTTCAACAGCTTACTTCTCTTAGAGAATTGAAGATTTCTCGCTGCCCCGACCTTCAGACCATTCCAGAAGAGGGTCTTCCATCTTCCTTATCTTC TCTGTCCATTCTCCGCTGCCCATTCCTGGAACAAAGGTGTCAGCAAGAGAAAGGTGAAGACTGGGCCAAGATTTCTCACATCCCCAACCTAGAAATCGGT TGCTACAATGTTTAA
AA sequence Show only first row Show all	>Lus10016316 pacid=23161838 polypeptide=Lus10016316 locus=Lus10016316.g ID=Lus10016316.BGIv1.0 annot-version=v1.0 MFTVRPSSDFARLIKSRKVDEGLLKKLIAAMTTINQLIDNASEKQLTDDAIRNWVADLKDAAYDADDLVDELGYEQLRSLAESSSKTTTGKMISYINNRN PFKDGINGKLKKLLERLDAVIKLKDVHGLSLDSGGKQSSVKTTAASHVNESCVYGREGDKEAIMKLLLLNDQTSDELGVIVIVGTGGAGKTALSKMIYND SKVQEHFQLNAWICVSEKFDANRITKHILEGLSGKAIDNRTLDQLQIELKGRLTQKKFLLILDDLWNENDGDWDLLQTPLKHGVKGSKIIVTTRHPNAAS ALPTSETFHLSPLTNDDCWTLFSNCASVDGNLSASPELESVGRELMEKCQGLPLSAKILGALLRSEQDAEKWGNILRSTLWNLQDKILPALILSYYYLPS YLKPCFAYCAIFPRDYAFERDELVAIWWNVDYKSIDNDVLNGLLSSLSNLHVLSFYGYKLVELPISIGGLKHLRYLNLSLTCVKELPATICILYNLQILI MQSCKELEVLPDSIGKLKQLKHLDLCQTAVGRLPDSVVLLNNLYHLDLTDTKLQEMPLQIGKLTKLQFLTDFVVGSHSGSTIKELEELHHLRETLRIWNL QNVEDSVDTLAAVLKTKKHLRRLELRWDGDADDSSHEVMLMDKLQPYVQLNSLKIDGYRGTTFPPWFGDSTFTNIVAMELSGCKNCYCLPPLGQLVSLEK LSIKAFDNIRTVGVEFCGSATSTEKPFRSLKTLEFENMPEWEEWTPVVENDGGNYPLLVELYLTDCPKLKQTLPSNLPSLKTLRLMGCQLLRVASLPSNS AAFKMEVRDTFRKVLLETSTEGMHSVHVTGCGSENAGTDEMEPVHGLSATLEEIEIAKCISLSCFPLDLFPKLKSLSIVNCQSLESLSSKEVIEEDLASL RSLRISECPKFVSFPTGGLPAPDLTDLVLLTCSNLTYLPEYINELPSLVELTVGHCPEIEFFPEGGLPSKLEKLEICDCDKLIAEHMQWNLQALPSLFHF SIDSYEGLESFPHETLLPSTLTTLSILSIQNLKSLDNKGIQHLTALKELKISACRSLESFPIGNWFPTLESLEINSCDKLIAGRSQWNIQAMTSLLHLKL YENEEVESFTGEMLLPSSLISLDIWDLYGLKSLEGLQQLTSLRELKISRCPDLQTIPEEGLPSSLSSLSILRCPFLEQRCQQEKGEDWAKISHIPNLEIG CYNV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14470			NB-ARC domain-containing disea...		Lus10016316 [exp]	0	1
AT3G22490			Seed maturation protein (.1)		Lus10022058 [exp]	7.6	0.9421
AT2G36020		HVA22J	HVA22-like protein J (.1)		Lus10021299 [exp]	10.1	0.9396
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10017094 [exp]	12.2	0.9378
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Lus10012804 [exp]	12.8	0.9149
AT3G53200	MYB	ATMYB27	myb domain protein 27 (.1)		Lus10014415 [exp]	15.2	0.9365
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10031421 [exp]	15.7	0.9373
AT4G02830			unknown protein		Lus10014664 [exp]	16.9	0.9303
AT1G12110		CHL1-1, CHL1, B...	CHLORINA 1, ARABIDOPSIS THALIA...		Lus10024614 [exp]	23.7	0.9318
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10037816 [exp]	27.9	0.9316
AT5G42610			Protein of unknown function (D...		Lus10010793 [exp]	29.9	0.9174

Compare expression of checked genes

Lus10016316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.