Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52340 388 / 5e-137 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 225 / 4e-73 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 224 / 5e-73 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 224 / 9e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 224 / 3e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 219 / 3e-70 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 217 / 4e-70 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 216 / 9e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 205 / 2e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 205 / 8e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019777 [exp] 551 / 0 AT1G52340 391 / 3e-138 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 264 / 4e-88 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 261 / 4e-87 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 247 / 5e-81 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021319 [exp] 246 / 7e-81 AT1G52340 229 / 1e-74 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 243 / 1e-79 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 241 / 2e-79 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 240 / 1e-78 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 238 / 4e-78 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G024300 [exp] 414 / 2e-147 AT1G52340 408 / 6e-145 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 276 / 7e-93 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 266 / 3e-89 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 264 / 4e-88 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 259 / 2e-86 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 258 / 8e-86 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 253 / 4e-84 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 251 / 2e-83 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 242 / 1e-79 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073800 [exp] 241 / 2e-79 AT1G52340 250 / 6e-83 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016354 pacid=23161870 polypeptide=Lus10016354 locus=Lus10016354.g ID=Lus10016354.BGIv1.0 annot-version=v1.0 ATGGCCTCAAGCAGCAGCTCCCCTGTTCCTTCCCCTGCTACCCAGAGCCAGAGGCTGTCGGGGAAAGTAGCATTGATAACCGGAGGAGCGAGCGGGATAG GGGAGAGCATAGCTCGCCTCTTCTACAAACACGGCGCCAAGCTCTGCATCGTCGACCTGCAAGACAACCTCGGAGACAGACTCTGCCAATCCCTCGGGGG CGGACCAAACGGCGTCTATTACCTTCACTGCGACGTCACAAATGAAGAGCACATCAGCCGCGCGGTCGACTTTGCGGCCGAGAAATTCGGAACGATCGAC ATCCTCGTCAACAATGCTGGCATCACGGGTCCGCCGTGTTCGGACATTCGAGACGCCAAGCTTTCGGATTATGAGCTGGTGTTCGACGTCAATGTTAAAG GTACATTTTTGGGGATGAAGCACGCAGCAAGAGTGATGATCCCATCCTCAAAACGGGGCTCGATCATCAACCTCTGCAGCGTTGCCGGAAACATGGGAGG GCTCGGTCCGCACACCTACACGGGCTCGAAGCATGCCGTCCTCGGTCTCACAAGAAGCGTTGCTGCCGAGCTAGGGAAGTACGGAATCCGGGTGAACTGT GTTTCGCCCTACGCGGTGCCCACGGGGCTTGCTCTAGCTCACTTGCCTGAAGACGAAAGAACCGAGGATGCAATGGCCGGGTTCCGAGCATTCGCGGAGA AGAACGCGAACCTGAACGGGGTCGGGCTGGAACCCGAGGATGTAGCGAATGCTGTGCTGTTCTTGGCGAGCGATGAAGCGAGGTACATTAGTGGTGATAA TCTGATGGTTGATGGTGGTCTCACTTGTACCAATCATTCGTTTCGTGTGTTTAGATAG
AA sequence Show only first row Show all	>Lus10016354 pacid=23161870 polypeptide=Lus10016354 locus=Lus10016354.g ID=Lus10016354.BGIv1.0 annot-version=v1.0 MASSSSSPVPSPATQSQRLSGKVALITGGASGIGESIARLFYKHGAKLCIVDLQDNLGDRLCQSLGGGPNGVYYLHCDVTNEEHISRAVDFAAEKFGTID ILVNNAGITGPPCSDIRDAKLSDYELVFDVNVKGTFLGMKHAARVMIPSSKRGSIINLCSVAGNMGGLGPHTYTGSKHAVLGLTRSVAAELGKYGIRVNC VSPYAVPTGLALAHLPEDERTEDAMAGFRAFAEKNANLNGVGLEPEDVANAVLFLASDEARYISGDNLMVDGGLTCTNHSFRVFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10016354 [exp]	0	1
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Lus10013605 [exp]	2.0	0.8328
AT3G04950			unknown protein		Lus10000934 [exp]	2.0	0.8091
					Lus10020868 [exp]	2.2	0.8059
AT4G22330		ATCES1	Alkaline phytoceramidase (aPHC...		Lus10043147 [exp]	3.5	0.8265
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	3.9	0.8093
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001841 [exp]	9.2	0.7720
AT3G10520		ATGLB2, ARATHGL...	NON-SYMBIOTIC HAEMOGLOBIN 2, A...		Lus10037926 [exp]	12.5	0.7587
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	15.3	0.7720
AT1G04040			HAD superfamily, subfamily III...		Lus10023731 [exp]	15.4	0.7886
AT3G60480			unknown protein		Lus10000560 [exp]	18.3	0.7721

Compare expression of checked genes

Lus10016354 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.