Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 348 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 345 / 4e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 91 / 4e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 89 / 3e-20 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50600 87 / 1e-19 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 87 / 1e-19 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47350 87 / 1e-19 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G05260 86 / 2e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50690 81 / 2e-17 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 81 / 2e-17 ATHSD4 hydroxysteroid dehydrogenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019684 [exp] 525 / 0 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 424 / 2e-151 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 411 / 3e-146 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004925 [exp] 377 / 1e-132 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 259 / 2e-86 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 192 / 4e-60 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031448 [exp] 91 / 8e-21 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 89 / 3e-20 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 87 / 2e-19 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 392 / 9e-138 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 359 / 2e-125 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 195 / 4e-61 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 93 / 8e-22 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.008G149201 [exp] 87 / 7e-20 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G100000 [exp] 87 / 8e-20 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G102000 [exp] 86 / 2e-19 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 85 / 6e-19 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.004G228533 [exp] 83 / 1e-18 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G099900 [exp] 84 / 2e-18 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016429 pacid=23161880 polypeptide=Lus10016429 locus=Lus10016429.g ID=Lus10016429.BGIv1.0 annot-version=v1.0 ATGGACTCTGTCGGGCTCGAAATCGTACTGATCACGGGATGTTCCGAGGGAGGGATCGGCCACGCTCTGGCCAAGCAGTTCGCCGCCACAAACAAGTGTC TGGTCGTGGCGACGAGCCGGTCGTTGGGTTCCATGAAGGACATGGAAGGCGACGACCGATTCTACCTCCAGGAGCTCGACATTTCGTCGGAGGAGAGCGT CAAGAAGGTGGTGGCGAATGTTGTTGAGAAGTACGGCAGAGTTGACGTTCTGGTCAACAATGCCGGCGTTCAGTGCGTTGGCCCTCTTGCCGAGGTGTCT CTGGAGGCTGTGCAGAGTACTTTCAACACTAATGTTTACGGTACGATGAGGATGATTCAAGCCGTTGTACCGCATATGGCTTCGAAAAAGAAGGGCAAGA TCGTAAATGTGGGAAGTATAGTGGTGTTGGCTGCTTTGCCTTGGGCTGGTGCATATAATGCTACCAAAGCCGCCCTCCATGCTTTAACTGATACACTCAG GTTGGAACTGAAACCACTGGGGATAAACGTGACAAACGTGGTACCAGGGGCCATAGGGACTAAGATCATGCGCTCTGCGGAGACCAACTACGACCAGTCG GGCTCCGAATGGAAGCTCTACAAGCCGTACGAGCCAGCGATGAGAAGGTTCCTCACCCTAGACAACGACAGCAACACGAGTCCTGTCGAGGATTTCGCGA AGCGTACGGTTGCTGCGATCCTTAAAAAGAACCCTCCGGCGTGGTTCTCCGCCGGCAAATACTCCACCATCTTTGCCTTCGCCTACTACTTGCCACTTCG TGTCAAGGATCTCCTCGTCCAATCTTTTCTCAAACCTTGA
AA sequence Show only first row Show all	>Lus10016429 pacid=23161880 polypeptide=Lus10016429 locus=Lus10016429.g ID=Lus10016429.BGIv1.0 annot-version=v1.0 MDSVGLEIVLITGCSEGGIGHALAKQFAATNKCLVVATSRSLGSMKDMEGDDRFYLQELDISSEESVKKVVANVVEKYGRVDVLVNNAGVQCVGPLAEVS LEAVQSTFNTNVYGTMRMIQAVVPHMASKKKGKIVNVGSIVVLAALPWAGAYNATKAALHALTDTLRLELKPLGINVTNVVPGAIGTKIMRSAETNYDQS GSEWKLYKPYEPAMRRFLTLDNDSNTSPVEDFAKRTVAAILKKNPPAWFSAGKYSTIFAFAYYLPLRVKDLLVQSFLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10016429 [exp]	0	1
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029318 [exp]	6.6	0.8175
AT2G27550		ATC	centroradialis (.1)		Lus10043385 [exp]	22.7	0.7764
AT4G35160			O-methyltransferase family pro...		Lus10018629 [exp]	35.2	0.7604
AT5G52790			CBS domain-containing protein ...		Lus10039288 [exp]	55.7	0.7378
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	100.9	0.7001
AT5G60660		PIP2F, PIP2;4	plasma membrane intrinsic prot...		Lus10015083 [exp]	136.7	0.7063
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10013130 [exp]	145.5	0.6889
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10032324 [exp]	157.7	0.6779

Compare expression of checked genes

Lus10016429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.