Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10050 323 / 1e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 320 / 2e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G03330 91 / 6e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G05260 87 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 86 / 1e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47350 86 / 2e-19 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT3G47360 86 / 2e-19 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT5G50700 85 / 1e-18 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 85 / 1e-18 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50690 84 / 1e-18 ATHSD7 hydroxysteroid dehydrogenase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019683 [exp] 518 / 0 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 424 / 2e-151 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 410 / 9e-146 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004925 [exp] 335 / 3e-116 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040878 [exp] 226 / 2e-73 AT5G65205 308 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 194 / 5e-61 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026260 [exp] 85 / 2e-19 AT1G10310 382 / 4e-136 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001511 [exp] 87 / 3e-19 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10032556 [exp] 85 / 8e-19 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 360 / 1e-125 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 327 / 8e-113 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 189 / 1e-58 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G101900 [exp] 94 / 2e-22 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 93 / 5e-22 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 91 / 6e-21 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 84 / 1e-18 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.004G228533 [exp] 82 / 3e-18 AT1G10310 376 / 1e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G102000 [exp] 82 / 4e-18 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.006G206500 [exp] 81 / 2e-17 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016430 pacid=23161875 polypeptide=Lus10016430 locus=Lus10016430.g ID=Lus10016430.BGIv1.0 annot-version=v1.0 ATGGACTCTGCCGGTCTAGAAATCGTTCTAATCACGGGCTGTTCTGTGGGAGGAATCGGCCACGCTCTGGCCAAGGAGTTTGCAGCCACAGGAAAGTGCC TGGTTGTTGCCACGGCTAGGTCGTTGAGCTCGATGAAGGAGTTTGAAAACGACGACCGGTTCTATCTGCAGGAGCTGGACGTCTTGTCTGACGAGAGTGT GGAGAAGGCGGTGGCGAATGTCATCGAGAAGTTCGGGAGGGTGGATGTTCTGGTTAACAACGCTGCTGTCCAGTGCATTGGTCCTCTTTCTGAGGTTTCT CTAGCTGATCTGGAGAATACTTTCAACACCAATGTTTATGGTCCGATGAGGATGGTTCAATCCGTTGTACCGCATATGGCATCTCGAAAGAAGGGGAAGA TAGTGAACGTAGGAAGCTTAGTGGTGCTGGTTCCCTTACCTTGGTGTGGTGCGTATACTGCAACCAAAGCTGCCATCCATTCTTTCTCTGATACCTTGAG GTTGGAACTGAAGCCACTGGGGATCAGCGTGACAAACGTGGCACCAGGGACCATATCAACAAAGATAATGAGCTCAGCTGAAACAAGCTTCAACAACCAG AGCTCTGAGTGGAAGCTCTACAAGCAATTTGAGCCTGCAATGAGAAGAGTTCTCTCCATGGGCAACGATGGCAGTCCTGCAGAGACATTTGCAAAGGATA CCGTTGATGCCATACTCGGCAAGAATAATCCTCCGGCTTGGTTCACCTCCGGCAAGCACTCCGCCATTACTCCGATTCTCGGGCTCTTGCCTATTCGTGT CAAAGATCTGCTCATCCGATCTTTTCTTGAACCTTGA
AA sequence Show only first row Show all	>Lus10016430 pacid=23161875 polypeptide=Lus10016430 locus=Lus10016430.g ID=Lus10016430.BGIv1.0 annot-version=v1.0 MDSAGLEIVLITGCSVGGIGHALAKEFAATGKCLVVATARSLSSMKEFENDDRFYLQELDVLSDESVEKAVANVIEKFGRVDVLVNNAAVQCIGPLSEVS LADLENTFNTNVYGPMRMVQSVVPHMASRKKGKIVNVGSLVVLVPLPWCGAYTATKAAIHSFSDTLRLELKPLGISVTNVAPGTISTKIMSSAETSFNNQ SSEWKLYKQFEPAMRRVLSMGNDGSPAETFAKDTVDAILGKNNPPAWFTSGKHSAITPILGLLPIRVKDLLIRSFLEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10016430 [exp]	0	1
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10035055 [exp]	12.7	0.7128
AT3G18550	TCP	AtBRC1, ATTCP18...	BRANCHED 1, TCP family transcr...		Lus10021713 [exp]	29.7	0.6269
AT5G38195			Bifunctional inhibitor/lipid-t...		Lus10033573 [exp]	39.3	0.6129
AT2G34930			disease resistance family prot...		Lus10039514 [exp]	112.2	0.4758
AT4G20280		TAF11	TBP-associated factor 11 (.1)		Lus10038380 [exp]	116.0	0.5416
AT1G80760		NLM7, NIP6;1	NOD26-like intrinsic protein 6...		Lus10041675 [exp]	116.1	0.5432
AT1G10880			Core-2/I-branching beta-1,6-N-...		Lus10005108 [exp]	176.1	0.5011
AT5G07610			F-box family protein (.1)		Lus10042989 [exp]	209.0	0.4806
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002613 [exp]	209.6	0.4743

Compare expression of checked genes

Lus10016430 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.