Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05820 509 / 0 Nucleotide-sugar transporter family protein (.1) AT3G11320 502 / 0 Nucleotide-sugar transporter family protein (.1) AT5G04160 425 / 9e-151 Nucleotide-sugar transporter family protein (.1) AT3G10290 419 / 9e-148 Nucleotide-sugar transporter family protein (.1) AT1G12500 385 / 3e-134 Nucleotide-sugar transporter family protein (.1) AT1G21870 179 / 5e-54 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G77610 176 / 6e-53 EamA-like transporter family protein (.1) AT5G25400 125 / 4e-33 Nucleotide-sugar transporter family protein (.1) AT5G11230 121 / 6e-32 Nucleotide-sugar transporter family protein (.1) AT4G32390 111 / 4e-28 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009878 [exp] 503 / 0 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 484 / 1e-173 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 474 / 4e-170 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 471 / 9e-169 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 422 / 2e-149 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 422 / 4e-149 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 340 / 6e-118 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10007029 [exp] 326 / 2e-111 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 182 / 2e-55 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194100 [exp] 509 / 0 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 504 / 0 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 501 / 0 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 493 / 1e-177 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 439 / 2e-156 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 420 / 8e-149 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 406 / 2e-142 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 393 / 3e-137 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 177 / 2e-53 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 174 / 5e-52 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10016446 pacid=23144837 polypeptide=Lus10016446 locus=Lus10016446.g ID=Lus10016446.BGIv1.0 annot-version=v1.0 ATGAGCAGCAGCAACAGTCGCCTGTTCACGATCGGCCTGATTTCAATATGGTACTCATCGAACATCGGAGTGATCATCTTAAACAAGTACCTCTTAAGCA ACTACGGCTTCCGCTACCCAATCTTCTTAACCCTCTGCCACATGCTGGCCTGTTCCTTACTCAGCTACGCCTCAATCACCTGGCTCAAGATCGTCCCCCT TCAGACGATCCGCTCCAGGCAGCAGTTCTTCAAGATCTCCGCCCTCAGCTTGATCTTCTGCTCCTCGATCGTCGCCGGAAACGTTTCCCTTAAGTACATC CCTGTTTCGTTCAATCAGGCAATCGGCGCCACGACGCCGTTTTTCACCGCGGTTTTGGCTTACCTGATGACCCGCAAGAAGGAAGGGTTCCTAACTTACG CTGCCCTCGTCCCTGTCGTCTCCGGCGTCATCGTTGCCAGCGGGGGGGAACCGAGCTTTCATTTATTTGGATTCATAATGTGCGTTGGAGCAACTGCTGC AAGGGCGCTCAAGACTGTTCTTCAGGGGATTCTGCTGTCTTCTGAAGGGGAGAAGCTGCACTCGATGAACTTGCTGATGTACATGGCACCAGTAGCAGTT GCTTTCCTTCTACCGACAGCTCTGATAATGGAAACAAACGTCATCGGAATCACAATAGCACAAGCAAAAGACGACAAGAGGTTCATATTTTACCTGCTCT TCAATGCTTCCCTTTCCTATCTGGTTAACTTGACCAATTTCCTCGTCACCAAGCACACCAGTGCATTGACTCTCCAGGTGCTGGGAAATGCAAAGGGTGC AGTTGCGGTAGTACTGTCTATTCTGATATTCAGGAATCCGGTGTCGGTGACCGGAATGTTGGGATACAGTGTGACTGTGTTTGGTGTTATCCTATACAAT GAGGCCAAGAAAAGAGCCAAGTCGTGA
AA sequence Show only first row Show all	>Lus10016446 pacid=23144837 polypeptide=Lus10016446 locus=Lus10016446.g ID=Lus10016446.BGIv1.0 annot-version=v1.0 MSSSNSRLFTIGLISIWYSSNIGVIILNKYLLSNYGFRYPIFLTLCHMLACSLLSYASITWLKIVPLQTIRSRQQFFKISALSLIFCSSIVAGNVSLKYI PVSFNQAIGATTPFFTAVLAYLMTRKKEGFLTYAALVPVVSGVIVASGGEPSFHLFGFIMCVGATAARALKTVLQGILLSSEGEKLHSMNLLMYMAPVAV AFLLPTALIMETNVIGITIAQAKDDKRFIFYLLFNASLSYLVNLTNFLVTKHTSALTLQVLGNAKGAVAVVLSILIFRNPVSVTGMLGYSVTVFGVILYN EAKKRAKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05820			Nucleotide-sugar transporter f...		Lus10016446 [exp]	0	1
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10001556 [exp]	6.3	0.7254
AT3G11690			unknown protein		Lus10029349 [exp]	7.5	0.6723
AT2G28250		NCRK	Protein kinase superfamily pro...		Lus10021460 [exp]	7.9	0.7394
AT3G01910		AT-SO, ATSO, SO...	sulfite oxidase (.1.2.3)		Lus10041560 [exp]	16.5	0.6712
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	18.0	0.6378
					Lus10033740 [exp]	23.7	0.6549
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10040879 [exp]	26.6	0.6713
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10030255 [exp]	28.0	0.6714
AT5G25170			PPPDE putative thiol peptidase...		Lus10041021 [exp]	33.8	0.6294
AT1G22170			Phosphoglycerate mutase family...		Lus10020910 [exp]	42.1	0.6399

Compare expression of checked genes

Lus10016446 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.