Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 283 / 4e-96 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 280 / 5e-94 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 277 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 276 / 2e-93 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 270 / 6e-91 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29370 270 / 1e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 267 / 1e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 266 / 3e-89 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29340 261 / 3e-87 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29310 260 / 7e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040737 [exp] 373 / 3e-131 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10001560 [exp] 314 / 3e-106 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 297 / 2e-101 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 273 / 5e-92 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 269 / 2e-90 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 263 / 3e-88 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 258 / 5e-85 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 253 / 5e-84 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 251 / 2e-83 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G245000 [exp] 301 / 3e-103 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 283 / 5e-96 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 271 / 5e-91 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 269 / 2e-90 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 268 / 3e-90 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 266 / 3e-89 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039300 [exp] 265 / 9e-89 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 256 / 1e-84 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 244 / 2e-80 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 201 / 4e-64 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016494 pacid=23144867 polypeptide=Lus10016494 locus=Lus10016494.g ID=Lus10016494.BGIv1.0 annot-version=v1.0 ATGGCCGAATCAACCGGCGGCAACGGCAGCAGCGGATTCGGGAATAGATGGTCACTAGACGGAATGACAGCTCTCATCACCGGCGGCACCAAAGGAATCG GAACTAGGTTCGCAATAGTGGAAGAATTTTCGAAGCTTGGCGCAACTGTGCATACCTGCTCCCGGAATGAAGAGGAGCTTAATCAGCGGCTAAATGAATG GGGAGCAAAGGGGTTTAAAGTCAGTGGATCTGTATGCGATGTGACTTCGCGAGTTGAACGAGAGAAGCTCGTCGAGACTGTCTCTTCTCTCTTCGCCGGC AAACTTCACATTCTTGTGAACAATGCAGGAGCAGCAATTGGGAGACGAACCACAGAAGTAACACCAGAAGAGCTCTCACATCTATGGGGATCGAACTTCG AATCCGGTTACAACTTGTGCCAACTCACACATCCTCTCCTCAAAGCTTCCGGCTCAGGAAGCATTGTTTTCATATCGTCGGTCTCTGGCTCAACATCCTT CAGTAACCTCGCAGCATACGGAGCAACCAAAGTCAGTCTTCATGCTGCAGGAGCAATCAATCAACTCGCTAGAAGTCTGGCATGCGAGTGGGCCAAAGAC AACATAAGAACCAACTCTGTTTCTCCTTGGTACACTAGAACTCCACTTGTCGAGCAGGATCTTGAGAACCAACGATTTGTCGAAGCGATTCTGAGTCGAA CCCCGTTGGGGCGGATAGCTGAGCCAGAGGATGTGTCGGCAACGGTGGCGTTCTTGTGCATGCCTGCTGCACGTTATGTTACAGGCCAGACTATATCTGT GGATGGAGGATTTACTGTTAATGGTTTCTCATTGTGA
AA sequence Show only first row Show all	>Lus10016494 pacid=23144867 polypeptide=Lus10016494 locus=Lus10016494.g ID=Lus10016494.BGIv1.0 annot-version=v1.0 MAESTGGNGSSGFGNRWSLDGMTALITGGTKGIGTRFAIVEEFSKLGATVHTCSRNEEELNQRLNEWGAKGFKVSGSVCDVTSRVEREKLVETVSSLFAG KLHILVNNAGAAIGRRTTEVTPEELSHLWGSNFESGYNLCQLTHPLLKASGSGSIVFISSVSGSTSFSNLAAYGATKVSLHAAGAINQLARSLACEWAKD NIRTNSVSPWYTRTPLVEQDLENQRFVEAILSRTPLGRIAEPEDVSATVAFLCMPAARYVTGQTISVDGGFTVNGFSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016494 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10028782 [exp]	2.4	0.9321
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10006291 [exp]	2.4	0.9207
AT3G53210			nodulin MtN21 /EamA-like trans...		Lus10028351 [exp]	5.7	0.9174
AT5G48340			unknown protein		Lus10041085 [exp]	7.3	0.9204
AT4G27290			S-locus lectin protein kinase ...		Lus10038554 [exp]	9.0	0.9037
AT1G13960	WRKY	WRKY4	WRKY DNA-binding protein 4 (.1...		Lus10026634 [exp]	10.5	0.9009
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027787 [exp]	10.7	0.9133
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	12.2	0.8945
AT5G06340		ATNUDX27	nudix hydrolase homolog 27 (.1...		Lus10021278 [exp]	13.1	0.8927
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10033718 [exp]	13.6	0.9069

Compare expression of checked genes

Lus10016494 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.