Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 576 / 0 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 399 / 2e-133 GRAS GRAS family transcription factor (.1) AT3G03450 227 / 6e-66 GRAS RGL2 RGA-like 2 (.1) AT1G66350 226 / 7e-66 GRAS RGL1 RGA-like 1 (.1) AT5G17490 212 / 2e-60 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 210 / 8e-60 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 202 / 3e-56 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT2G04890 197 / 4e-56 GRAS SCL21 SCARECROW-like 21 (.1) AT5G66770 201 / 6e-56 GRAS GRAS family transcription factor (.1) AT1G63100 197 / 6e-54 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040734 [exp] 1024 / 0 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10003540 [exp] 379 / 1e-123 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 374 / 2e-121 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10041540 [exp] 307 / 2e-94 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 309 / 4e-94 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10010462 [exp] 249 / 6e-75 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10033583 [exp] 234 / 5e-68 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 231 / 8e-67 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10029592 [exp] 216 / 8e-61 AT1G63100 669 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143833 [exp] 608 / 0 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 597 / 0 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.016G018900 [exp] 395 / 3e-131 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.006G021400 [exp] 394 / 7e-131 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.002G036100 [exp] 384 / 7e-126 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 370 / 1e-120 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 315 / 3e-97 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 233 / 2e-67 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 231 / 1e-66 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G109400 [exp] 229 / 1e-65 AT1G63100 711 / 0.0 GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016496 pacid=23144886 polypeptide=Lus10016496 locus=Lus10016496.g ID=Lus10016496.BGIv1.0 annot-version=v1.0 ATGGCGGAGATTCCCAATGATAGCGGTGCAGGCAACGGAGTCGTGGTCAGAAGGAAAATGGAGAAGAAAAGGATTGCATCTGAAATGTTGCAACCAACGG CTACAGCCAACAACCAGAATCAAAACCAACGGCGGCCGTACTACCGGAGGACAGCAGTTAGTAATAGTACTGTTGTTCTTCCCGGCGTTGACCAACACGA CATGAACTTAGAGGAGTTGGTCAACTACTCCACTACTACTACTACTACTAGTGCAACAATGTTGTCATCATCACCTTCTTCTTCTTCAGTCAACGTGTTC ACCACTCCACCCAATGGCAATGATTGTAATAACAATCTTGTGTGTGGGTTTTCTGGTCTTCCACTGTTCCCTCCTTGTCAAAAGAAGATTAGTAGTGGTA GAGAAAGAGAAGATCACATTTCACCACATGCCAATCAGACTGTCGCGGCAGCTTCAATCTCAGCCTCCTCCTCGTCTCCGGTGATCATCACTGGTCAGAT GGTTGAGGAAGAGGTAGAGGCCAGTGGTTCATCGTCATCGAGCTGGATTAACGGAATAATAAAGGACCTCATCAACAGCGCATCATCAGTTTCTTCAGCT TCCGGCGTCTCCATCCCACAGCTGATTCAGAACGTGAGAGATATCATATACCCTTGCAACACTAACCTAGCCTCTTTGCTCGAACACAAGCTCCGTACCC TCCTCAACAACCCTACTACTACTACTATCTCTAATGTCCAAATCTCTCCTAATATTCTTCCACCTTACTCTGGATCTCCTGCTTCTGCTTCTGAGGAGGA GAGAGATATTAGGTGTTCATCCAATACAATCTCCGCCGCCGCCACCTCCACCTCCAGAGAGCAAGCACAAGCACAAGCACAAGTTGAGAAGAAAGAAGAT GGGGTTGAGAAAAAGAGAGATGAAGATGGGTTGCACTTGCTGACGTTGCTCCTACAGTGCGCAGAGGCGGTGTCTGCTGATAATCTGGAGGAGGCTAACA AGATGTTGCTTGAGATATCTGAGCTCTCCTCCCCATTTGGAACTTCTGCGCAGAGGGTGGCCGCCTACTTCTCCGAAGCTATGTCAGCTAGGGTACTAAC TTCCTGCCTTGGACTAGCACCCCAAAACTCTAGCATCCTCCAAAACAACAACTACTACTCCACTAGGATTGCCTCTGCTTTCCAGGTGTTCAATGGGATT AGCCCATTCGTGAAGTTCTCGCACTTCACGGCGAACCAAGCCATACAGGAAGCTTTCGAGAGAGAAGATCGAGTACATATCATAGATCTCGACATAATGC AAGGTTTGCAGTGGCCTGGACTGTTCCACATTCTAGCTTCCAGACCAGGCGGCCCACCTTACATACGCCTCACCGGCCTAGGCTCCTCCTTACACTCCCT CCAATCTACCGGGAAGAGGCTATCTGACTTCGCCCACAAGTTAGGTCTGCCATTCGAGTTCATCCCGGTAGCCGACAAGGTCGGCAACCTAAACTGGGAG CGGCTCAACGTGACTAACAAGAAAGAGGCCGTAGCAGTACACTGGTTGCAACACTCGTTATACGACGTCACGGGCTCTCACGCCAACACACTCTCTCTAC TAAAGCGGCTATCTCCCAAAGTGGTGACAGTAGTGGAACAAGACCTGAGCCACGATACGGGGTCGTTTCTGGGCCGGTTCGTGGAAGCGATCCACTACTA CTCGGCGCTGTTCGACTCCCTTGGTGCTAGCTACGGAGAGGAGAGCGAGGAGAGACACGTCGTGGAGCAGCAGCTGCTGTCCCGAGAAATACGCAACGTT TTGGCTACTAATACTGGTACGGGTGCTGGTACTAGTACTAGCAGTTGGAGGGGGAAGTTGGAGAAGTCGGGGTTTAAGGGACTGTCGCTTGCTGGGAATG CGGCGACGCAAGCTACGTTACTTCTGGGGATGTTTCCGTGTGATGGTTATACGTTGGTTGAGGATAAAGGAACTCTTAAGCTTGGTTGGAAAGATCTTTG TTTGCTCACTGCTTCGGCGTGGAAACCTCCGACTACGACAACGATGACCGAGGTCGTCGATCTGCCTGGTTCGACCGGCCTCCAACAATACCATCATCAT CCATTGATGCCGACAACATCCTAG
AA sequence Show only first row Show all	>Lus10016496 pacid=23144886 polypeptide=Lus10016496 locus=Lus10016496.g ID=Lus10016496.BGIv1.0 annot-version=v1.0 MAEIPNDSGAGNGVVVRRKMEKKRIASEMLQPTATANNQNQNQRRPYYRRTAVSNSTVVLPGVDQHDMNLEELVNYSTTTTTTSATMLSSSPSSSSVNVF TTPPNGNDCNNNLVCGFSGLPLFPPCQKKISSGREREDHISPHANQTVAAASISASSSSPVIITGQMVEEEVEASGSSSSSWINGIIKDLINSASSVSSA SGVSIPQLIQNVRDIIYPCNTNLASLLEHKLRTLLNNPTTTTISNVQISPNILPPYSGSPASASEEERDIRCSSNTISAAATSTSREQAQAQAQVEKKED GVEKKRDEDGLHLLTLLLQCAEAVSADNLEEANKMLLEISELSSPFGTSAQRVAAYFSEAMSARVLTSCLGLAPQNSSILQNNNYYSTRIASAFQVFNGI SPFVKFSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYIRLTGLGSSLHSLQSTGKRLSDFAHKLGLPFEFIPVADKVGNLNWE RLNVTNKKEAVAVHWLQHSLYDVTGSHANTLSLLKRLSPKVVTVVEQDLSHDTGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNV LATNTGTGAGTSTSSWRGKLEKSGFKGLSLAGNAATQATLLLGMFPCDGYTLVEDKGTLKLGWKDLCLLTASAWKPPTTTTMTEVVDLPGSTGLQQYHHH PLMPTTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10016496 [exp]	0	1
AT5G41920	GRAS		GRAS family transcription fact...		Lus10040734 [exp]	2.6	0.8332
AT1G09812			unknown protein		Lus10035787 [exp]	7.5	0.8667
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004759 [exp]	7.9	0.7971
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10042394 [exp]	10.9	0.8479
AT4G26490			Late embryogenesis abundant (L...		Lus10015606 [exp]	11.1	0.8367
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10004377 [exp]	13.3	0.8446
					Lus10003411 [exp]	16.0	0.8304
AT4G16780	HD	ATHB2, HAT4, AT...	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10040175 [exp]	22.0	0.8337
					Lus10016958 [exp]	22.7	0.8344
AT4G19370			Protein of unknown function (D...		Lus10035672 [exp]	23.7	0.8156

Compare expression of checked genes

Lus10016496 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.