Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 337 / 4e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 318 / 5e-110 SAG13 senescence-associated gene 13 (.1.2.3) AT1G07440 318 / 5e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 315 / 1e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 310 / 6e-107 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29360 302 / 1e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 301 / 2e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 301 / 4e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29330 298 / 4e-102 TRI tropinone reductase (.1) AT2G29310 293 / 7e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040733 [exp] 490 / 8e-178 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 476 / 5e-172 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 448 / 4e-161 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 387 / 4e-137 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 369 / 6e-130 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 351 / 1e-122 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 343 / 2e-119 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 333 / 1e-115 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 324 / 4e-112 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 327 / 1e-113 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 318 / 7e-110 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 317 / 1e-109 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 306 / 2e-105 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 303 / 5e-104 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 304 / 3e-103 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 301 / 3e-103 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 278 / 7e-94 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 277 / 1e-93 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 266 / 8e-90 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016497 pacid=23144815 polypeptide=Lus10016497 locus=Lus10016497.g ID=Lus10016497.BGIv1.0 annot-version=v1.0 ATGGAGGGTGCAGAAAGTAGCAGTTTCAAGAGCAAGTTGAGCAGCAGATGGTCTCTCCATGACAAGACTGCACTTGTCACTGGTGACACTAAAGGACTTG GGTATGAAATCGTTGAAGAATTGGCAGGACTAGGGGCTATTGTGCACACATGCTCCAGAAATCAGGCAGAAATTAACAAGTGTCTGAATGAATGGAAAGA CAAGGGTCTTGAGGTAACTGGTTCTGTCTGTGATTTGACCTCTGCAGCAGAAAGACAGAACCTAATCCAAACCTTGTCATCCCAATTCAATGGAAAGCTA AACATCCTGATTAATAACGCAGGGACTAACATATTTAAGCCGACACTGGAGTTCACTGACGAAGATTACTCGTACCTGATGCAAACCAATCTCGAATCGG CCTATAGTCTGAGTCTGCTTGCTCACCCTCTGCTGAAAAACTCAGGGGAAGGCAACATAGTCTTCATGTCGTCTGCTGCTGGTGTGATTTCCATGAATGT TGGATCCATATATGGGATGACCAAAGCTGCTATGGTTCAACTTACAAAGGACCTTGCCTGTGAGTGGGCAAAAGACAACATAAGGATCAACTGTGTTGCA CCATGGTTCATCATAACTCCTATCAATGCAGAGTTATTCGAGAGTGAGAAGTTCACAACTGCAGTGATAGCTCAAACCCCGATGGGACGAACGGGGAAGC CGGAAGAGGCAGCTGGGCTGGTGGCATTCCTCTGCCTTCCTGCTTCCTCTTATGTCACCGGCCAGACTGTAGCCGTTGACGGAGGAGCTACTGTGAATTG CTTCTCCCCTCCTTCATGA
AA sequence Show only first row Show all	>Lus10016497 pacid=23144815 polypeptide=Lus10016497 locus=Lus10016497.g ID=Lus10016497.BGIv1.0 annot-version=v1.0 MEGAESSSFKSKLSSRWSLHDKTALVTGDTKGLGYEIVEELAGLGAIVHTCSRNQAEINKCLNEWKDKGLEVTGSVCDLTSAAERQNLIQTLSSQFNGKL NILINNAGTNIFKPTLEFTDEDYSYLMQTNLESAYSLSLLAHPLLKNSGEGNIVFMSSAAGVISMNVGSIYGMTKAAMVQLTKDLACEWAKDNIRINCVA PWFIITPINAELFESEKFTTAVIAQTPMGRTGKPEEAAGLVAFLCLPASSYVTGQTVAVDGGATVNCFSPPS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	0	1
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	2.8	0.8786
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	5.7	0.8576
AT5G35732			unknown protein		Lus10006404 [exp]	5.8	0.8689
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Lus10001786 [exp]	7.1	0.8105
					Lus10011339 [exp]	8.9	0.8575
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10004413 [exp]	13.3	0.8196
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10030422 [exp]	14.7	0.8005
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Lus10038218 [exp]	15.1	0.8081
AT2G32300		UCC1	uclacyanin 1 (.1)		Lus10003799 [exp]	15.3	0.8105
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10023213 [exp]	15.8	0.8453

Compare expression of checked genes

Lus10016497 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.