Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 342 / 3e-119 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29150 341 / 7e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 338 / 6e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29340 334 / 2e-116 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29290 328 / 9e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 325 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 318 / 4e-110 TRI tropinone reductase (.1) AT2G30670 318 / 8e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 316 / 3e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040733 [exp] 492 / 2e-178 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 485 / 1e-175 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 471 / 3e-170 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 415 / 6e-148 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 409 / 1e-145 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 382 / 5e-135 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 363 / 1e-127 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 352 / 3e-123 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 342 / 3e-119 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 345 / 1e-120 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 340 / 1e-118 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 339 / 2e-118 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.005G039500 [exp] 325 / 1e-112 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 322 / 2e-111 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 321 / 7e-111 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 323 / 9e-111 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 297 / 1e-101 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 290 / 1e-98 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 280 / 2e-95 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016498 pacid=23144823 polypeptide=Lus10016498 locus=Lus10016498.g ID=Lus10016498.BGIv1.0 annot-version=v1.0 ATGGAGGCTGTAGTAGAAAATAGCAGTTTCAAGACCAAGTTGAGCAGCAGATGGTCTCTCCATGGCAAGACTGCACTTGTCACTGGCGGCACTAAAGGAC TTGGTTATGCAATCGTTGAGGAATTGGCAGGACTAGGGGCTATTCTGCACACATGTTCCAGAAATGAGGCAGAACTTAACAAGTGTTTGAATGAATGGAA AGACAAGGGTCTTGAGGTAACTGGTTCGGTCTGTGATGTTTCCTCTGCAGCTGAAAGACAGAACCTAATCCAGACCGTGTCATCTCAATTCAATGGAAAG CTAAACATTCTGATTAATAATGTAGGGACTAACATATACAAGCCAACACTGGAATACACTGATGAAGATTACTCGTACGTGATGCGAACCAATCTCGAAT CGGCCTATAGTCTGAGTTTGCTTGCTCACCCTCTTCTGAAAAACTCAGGGGAAGGAAGCATTGTCTTCATGTCGTCTGCTGCTGGTGTGATTTCTGTGAA TGTTGGACCCATATATGGGATGACCAAAGCTGCAATGGTTCAACTTACAAAGGACCTAGCCTGCGAGTGGGCAAAAGACAAGATAAGGATCAACTGTGTT GCACCCTGGTTCATCATAACTCCAATCACATCAAATTTATTCAAGAGTGACAAGTTTTCAAAGGCCGTGATGGATCAAACTCCGATGGGAAGAACAGGGA AGCCGGAGGAGGCAGCTGGGTTGGTGGCATTCCTCTGCCTTCCCGCGTCATCTTACGTCACTGGCCAGACCGTTGCCGTTGACGGAGGAGCCACTGTTAA TTGCTTCTCCCCTCCATGA
AA sequence Show only first row Show all	>Lus10016498 pacid=23144823 polypeptide=Lus10016498 locus=Lus10016498.g ID=Lus10016498.BGIv1.0 annot-version=v1.0 MEAVVENSSFKTKLSSRWSLHGKTALVTGGTKGLGYAIVEELAGLGAILHTCSRNEAELNKCLNEWKDKGLEVTGSVCDVSSAAERQNLIQTVSSQFNGK LNILINNVGTNIYKPTLEYTDEDYSYVMRTNLESAYSLSLLAHPLLKNSGEGSIVFMSSAAGVISVNVGPIYGMTKAAMVQLTKDLACEWAKDKIRINCV APWFIITPITSNLFKSDKFSKAVMDQTPMGRTGKPEEAAGLVAFLCLPASSYVTGQTVAVDGGATVNCFSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	0	1
AT1G48745			unknown protein		Lus10013499 [exp]	3.2	0.7002
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	4.4	0.7426
AT5G26620			unknown protein		Lus10031447 [exp]	8.0	0.7013
					Lus10007688 [exp]	10.2	0.6898
					Lus10031183 [exp]	12.4	0.7176
AT5G20140			SOUL heme-binding family prote...		Lus10040682 [exp]	13.0	0.6983
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	15.3	0.7116
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10003617 [exp]	17.6	0.6834
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10029875 [exp]	23.4	0.6288
AT4G14103			F-box/RNI-like superfamily pro...		Lus10017218 [exp]	26.2	0.6911

Compare expression of checked genes

Lus10016498 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.