Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 337 / 4e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 331 / 6e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 328 / 6e-114 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 328 / 1e-113 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29350 325 / 2e-112 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29290 322 / 1e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 316 / 5e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 313 / 1e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29330 311 / 4e-107 TRI tropinone reductase (.1) AT2G29370 308 / 6e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040731 [exp] 454 / 2e-163 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 415 / 6e-148 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 412 / 7e-147 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 400 / 3e-142 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 397 / 6e-141 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 343 / 9e-120 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 341 / 9e-119 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 329 / 6e-114 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 322 / 6e-111 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 335 / 1e-116 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 322 / 2e-111 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 318 / 6e-110 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 313 / 8e-108 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 311 / 8e-106 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 303 / 9e-104 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 299 / 2e-102 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 296 / 6e-101 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 279 / 2e-94 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 266 / 7e-90 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016499 pacid=23144866 polypeptide=Lus10016499 locus=Lus10016499.g ID=Lus10016499.BGIv1.0 annot-version=v1.0 ATGGAGGTAGCAAGCAGCAGTTTCAAGAGCAAGTTAAGCAACAGGTGGTCTCTCCAAGGACAGACTGCACTTGTCACTGGTGGTTCCAAAGGAATTGGAT ATGCAGTGGTGGAAGAATTGGCAGGCCTAGGAGCCATTGTGGACACATGTTCCAGAAACCAGGCAGACCTTGACAAGTGTTTGATTGACTGGAAGGAGAA GGGTCTGGATCAGGTAACTGGTTCAGTCTGTGATGTTTCCTCTGCAGCTCAAAGAGAGAAGCTAATGCAGACCGTCTCGTCACAGTTCACCGGGAAGCTT AACATTTTGGTTAACAATGCAGGAACGTTCGTAAACAAGCCCACTGTGGAATTCACGGATGAAGATTACTCCTTCCAGATGAGTACAAATCTGGAGTCGG CTTTTAGTCTGAGTAAACTAGCTCATCCTCTTTTGAAAAGTTCAGGGGAAGGAAGCATCATCTTCATGTCTTCTGTCGCCGGTGTTTCTGTGGTGCAAAT TGGGTGCGTATATGGGATGACCAAAGCTGCAATGGTTCAACTTACAAAGAATCTGGCTTGCGAGTGGGCTAAGGACAATATAAGGGTCAACTGTGTTGCT CCCTGGTTCATCACATCTCCTCTCACTAAAGCCGTTTTGGAGGATGAGGATGAGAATTTGCACAGGGCGGTGGTGGCTCAGACTCCGATGGGGCGAACTG GAAACCCGGAGGAGATAGCTGGAATGACGGCATTCCTCTGCCTTCCTGCAGCCTCTTACGTCACCGGTCAGACAGTCGCGGTTGATGGGGGGACCACTGT GCATAGCTTCACTCCTCCGGGAAGCTCATGA
AA sequence Show only first row Show all	>Lus10016499 pacid=23144866 polypeptide=Lus10016499 locus=Lus10016499.g ID=Lus10016499.BGIv1.0 annot-version=v1.0 MEVASSSFKSKLSNRWSLQGQTALVTGGSKGIGYAVVEELAGLGAIVDTCSRNQADLDKCLIDWKEKGLDQVTGSVCDVSSAAQREKLMQTVSSQFTGKL NILVNNAGTFVNKPTVEFTDEDYSFQMSTNLESAFSLSKLAHPLLKSSGEGSIIFMSSVAGVSVVQIGCVYGMTKAAMVQLTKNLACEWAKDNIRVNCVA PWFITSPLTKAVLEDEDENLHRAVVAQTPMGRTGNPEEIAGMTAFLCLPAASYVTGQTVAVDGGTTVHSFTPPGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016499 [exp]	0	1
					Lus10003883 [exp]	4.2	0.8365
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040731 [exp]	7.9	0.8118
AT5G13720			Uncharacterised protein family...		Lus10016380 [exp]	9.5	0.8687
AT4G25830			Uncharacterised protein family...		Lus10015528 [exp]	12.7	0.8398
AT5G40500			unknown protein		Lus10022273 [exp]	15.5	0.8205
AT1G12250			Pentapeptide repeat-containing...		Lus10032239 [exp]	22.1	0.8665
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10040457 [exp]	29.4	0.7975
AT5G09660		PMDH2	peroxisomal NAD-malate dehydro...		Lus10020501 [exp]	31.1	0.8416
AT4G25830			Uncharacterised protein family...		Lus10019999 [exp]	31.4	0.8166
AT2G39420			alpha/beta-Hydrolases superfam...		Lus10003305 [exp]	36.9	0.8372

Compare expression of checked genes

Lus10016499 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.