Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07510 1046 / 0 FTSH10 FTSH protease 10 (.1) AT2G29080 1031 / 0 FTSH3 FTSH protease 3 (.1) AT1G50250 409 / 1e-132 FTSH1 FTSH protease 1 (.1) AT5G42270 400 / 3e-129 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 379 / 2e-121 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 375 / 1e-119 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT1G06430 373 / 6e-119 FTSH8 FTSH protease 8 (.1) AT5G53170 356 / 2e-111 FTSH11 FTSH protease 11 (.1) AT2G26140 351 / 2e-110 FTSH4 FTSH protease 4 (.1) AT5G58870 340 / 4e-105 FTSH9 FTSH protease 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040785 [exp] 1229 / 0 AT1G07510 1078 / 0.0 FTSH protease 10 (.1) Lus10001573 [exp] 1159 / 0 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10004973 [exp] 775 / 0 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10004972 [exp] 586 / 0 AT1G07510 580 / 0.0 FTSH protease 10 (.1) Lus10012277 [exp] 409 / 2e-135 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 412 / 1e-133 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10016003 [exp] 406 / 3e-131 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 377 / 1e-120 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10001420 [exp] 377 / 2e-119 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033600 [exp] 1095 / 0 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 1075 / 0 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.002G012000 [exp] 411 / 2e-133 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.005G249200 [exp] 407 / 6e-132 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 376 / 3e-120 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.014G139500 [exp] 374 / 7e-119 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 373 / 1e-118 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.015G020700 [exp] 347 / 9e-108 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 343 / 1e-106 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.006G227700 [exp] 340 / 3e-106 AT2G26140 1066 / 0.0 FTSH protease 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0126 [flax] [poplar] PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10016516 pacid=23144830 polypeptide=Lus10016516 locus=Lus10016516.g ID=Lus10016516.BGIv1.0 annot-version=v1.0 ATGAGGTTTATGAGAAGTTATTTGACTTCTATCGGAGCTACCAATGCCTCTGCTGCAAAAACTTCCTTTTCCAATCTCAACTCCATTCTAGCGAACCCCA GAGTTCGGCGGTTCTTCTCCAGCGAGGCTCCCAAGCAGAAGAATTATGAGAACTTTTATCCTAAGGGAAAGAAGGAAGCCCCGAAAGGTGATGGGAAGAA ATCTGAGTCCAAAGAGAGTTCAAATGCCGATGGCGACTCGGGCTTTAAGAAGCAATTAAATATCTACTTCTTAATTGGCGCGTTGATTCTCATGGCATTT CCTTCTGGCTCGAATGGGCACGAACAGCAGATCAGTTTCCAAGAGTTCAAAAACAAGCTTCTAGAACCTGGCTTAGTTGATCATATAGTTGTCTCCAACA AATCTGTTGCAAAAGTTTACGTGAAGAATGCACCCCAAAGCCAGACTGATGGTGAAGAAGTCTCAGGGCCTACAGACAGCAGTCCTGTTACAGGACGTGG AGGCCAATATAAATATTACTTCAATATTGGGAGTGTGGAAGCTTTTGAGGAGAAGCTAGAAGAAGCACAGAAGGCATTGGGGATAGACCCGCATAACTAT TTACCTGTTACATATGCCTCCGAGGTTTCTTGGTTCCGAGAGATTTTGAGGTTTGCACCAACCATATTGCTTTTGGGAACCATCTTGTACATCGGGAAAC GGATGCAAGGTGGAATAAGTATTGGAGGAGGTGGTGGACAGGGTGCTCGTGGTATCTTCAACGTAGGCAAAGCTCACATAACTAAAGTGGATAAAAATGC CAAGAACAAGGTGTACTTCAAAGATGTTGCAGGCTGTGATGAAGCAAAGCAAGAAATTATGGAGTTTGTTCACTTCCTTAGGAACCCTAAAAAGTATGAA GAGTTGGGAGCAAAGATTCCAAAAGGTGCTCTTCTAGTTGGACCACCTGGGACTGGGAAGACCCTTCTAGCAAAGGCAACAGCTGGGGAATCTGGTGTGC CCTTCTTGTCTATTTCTGGTTCTGATTTCATGGAGATATTTGGTGGAGTTGGGCCGTCTAGAGTGAGAAACCTCTTTCAAGAAGCGAGGCAGTGTGCTCC TAGTATCATATTCATTGACGAAATTGATGCAATTGGCAAGGCAAGGGGCCGAGGTGGCTTCAGTGGTGGTAATGATGAGCGGGAAAGTACCCTAAATCAA CTGCTGGTAGAAATGGATGGATTTGCAACTACTTCAGGAGTGGTTGTGCTTGCTGGCACTAACAGACCTGACATATTAGATAAAACTCTTTTTAGGGCTC TTTTGAGGCCAGGCAGATTCGATAGGCAAATCACCATTGACAAACCAGATATTAAAGGGCGTGAACAAATATTTCAGATTTACTTGAAGAAACTCAAGCT TGATCGAGAACCGTCATTCTATTCTGAAAGGCTGGCCGCCCTCACTCCGGGGTTTGCCGGAGCTGACATTGCAAATGTTTGTAACGAAGCTGCTCTAATT GCTGCCAGGAACGAAGTTCCAGAAGTCCATATGGAACATTTTGAGTCTGCCATAGATAGAGTAATTGGTGGCTTGGAGAAGAAGAACAGGCTGATAAGCA AGCCAGAACGTCACACTGTTGCTTACCATGAATCTGGTCATGCTGTTACTGGATGGTTTTTAGAGCATGCAGAACCCCTCCTGAAAGTCACGATCGTTCC TCGTGGTACAGCTGCCCTCGGGTTCGCTCAGTATGTTCCAAATGAAAACCTTCTGATGACCAAGGAACAACTTTTCGATATGACATGTATGACTCTCGGA GGTCGAGCTGCTGAACAGGTACTGTTGGGGAAAATCTCAACAGGAGCGCAAAATGACTTGGAGAAAGTGACAAAGATGACCTATGCGCAAGTCGCCATCT ACGGATTCAGCGAGAAGGTTGGCCTTCTATCTTTCCCCCAAAGGGAAGAGTCGTTCGAAATGAGCAAGCCGTACAGCAGCAAGACAGGGGCACTTATCGA TGGCGAGGTACGAGAGTGGGTTAACACGGCATATGAACGTACACTCCAGCTTGTAGAAGAACACAAGGACAAGATTGCCAAGATTGCTGAGATGTTGCTG GAGAAGGAAGTTCTCCACCAAGAGGACTTGGTTGGAGTCCTGGGTGAGAGGCCGTTTAAGGCGAGCGAGGCCACCAACTACGATAAATTCAAGCAAGGTT TCAAAGATGATGATGAAAAAAAGACACAGCCCGACGACAGGTGTGAATGA
AA sequence Show only first row Show all	>Lus10016516 pacid=23144830 polypeptide=Lus10016516 locus=Lus10016516.g ID=Lus10016516.BGIv1.0 annot-version=v1.0 MRFMRSYLTSIGATNASAAKTSFSNLNSILANPRVRRFFSSEAPKQKNYENFYPKGKKEAPKGDGKKSESKESSNADGDSGFKKQLNIYFLIGALILMAF PSGSNGHEQQISFQEFKNKLLEPGLVDHIVVSNKSVAKVYVKNAPQSQTDGEEVSGPTDSSPVTGRGGQYKYYFNIGSVEAFEEKLEEAQKALGIDPHNY LPVTYASEVSWFREILRFAPTILLLGTILYIGKRMQGGISIGGGGGQGARGIFNVGKAHITKVDKNAKNKVYFKDVAGCDEAKQEIMEFVHFLRNPKKYE ELGAKIPKGALLVGPPGTGKTLLAKATAGESGVPFLSISGSDFMEIFGGVGPSRVRNLFQEARQCAPSIIFIDEIDAIGKARGRGGFSGGNDERESTLNQ LLVEMDGFATTSGVVVLAGTNRPDILDKTLFRALLRPGRFDRQITIDKPDIKGREQIFQIYLKKLKLDREPSFYSERLAALTPGFAGADIANVCNEAALI AARNEVPEVHMEHFESAIDRVIGGLEKKNRLISKPERHTVAYHESGHAVTGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLG GRAAEQVLLGKISTGAQNDLEKVTKMTYAQVAIYGFSEKVGLLSFPQREESFEMSKPYSSKTGALIDGEVREWVNTAYERTLQLVEEHKDKIAKIAEMLL EKEVLHQEDLVGVLGERPFKASEATNYDKFKQGFKDDDEKKTQPDDRCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10016516 [exp]	0	1
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10040451 [exp]	3.0	0.9416
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	8.4	0.9283
AT1G13190			RNA-binding (RRM/RBD/RNP motif...		Lus10019147 [exp]	9.2	0.9302
AT3G57150		ATNAP57, ATCBF5...	homologue of NAP57 (.1)		Lus10023565 [exp]	11.7	0.9310
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10010429 [exp]	13.5	0.9331
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	14.4	0.9232
AT3G01790			Ribosomal protein L13 family p...		Lus10032063 [exp]	16.7	0.9224
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10012833 [exp]	17.7	0.9276
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Lus10039636 [exp]	21.9	0.9155
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	23.9	0.8698

Compare expression of checked genes

Lus10016516 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.