Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 450 / 1e-153 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 438 / 5e-150 GRAS GRAS family transcription factor (.1) AT5G59450 421 / 3e-144 GRAS SCL11 GRAS family transcription factor (.1) AT2G37650 423 / 5e-144 GRAS SCL9 GRAS family transcription factor (.1) AT3G46600 412 / 4e-143 GRAS GRAS family transcription factor (.1.2.3) AT2G29065 385 / 5e-130 GRAS family transcription factor (.1) AT1G07520 374 / 8e-125 GRAS GRAS family transcription factor (.1) AT5G48150 189 / 4e-56 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT4G17230 188 / 4e-55 GRAS SCL13 SCARECROW-like 13 (.1) AT1G50600 185 / 1e-53 GRAS SCL5 scarecrow-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040787 [exp] 704 / 0 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 467 / 5e-160 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 453 / 3e-158 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040284 [exp] 461 / 5e-158 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 447 / 8e-153 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 446 / 4e-152 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 431 / 5e-147 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 425 / 1e-144 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040789 [exp] 397 / 3e-135 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033300 [exp] 557 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 538 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 478 / 7e-165 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G033100 [exp] 473 / 4e-164 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242000 [exp] 472 / 1e-163 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.008G057400 [exp] 467 / 1e-160 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G241700 [exp] 460 / 9e-158 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 457 / 6e-157 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.009G032800 [exp] 444 / 6e-151 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032900 [exp] 437 / 5e-150 AT1G07530 488 / 2e-163 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016519 pacid=23144878 polypeptide=Lus10016519 locus=Lus10016519.g ID=Lus10016519.BGIv1.0 annot-version=v1.0 ATGGCTCATTATTTTGCTAATGCTTTAGAGACTCGTTTGGCAGGAGCTGCTACTCCTAAGTATACCGTTGATGTGAAAGGGAAGACTCCCATGGCCGAGA TTTTGAAAGCATACCAGATGTTCCTTAACTCTTGTCCTTTCAAGAGGATGTCTAATTTCTTCGCTAACAGGACTGTATTCAATCTGGCTGAGAACGTTAG CAGCCTGCACATTATTGATTTCGGTATCCTGTATGGATTCCAATGGCCTTGCTTGATCCAGCGGCTTTCGGAGAGGCCAGGAGGCCCTCCGAAGCTACGA ATTACAGGGATTGATTTCCCCCAGCCTGGATTCCGGCCTACCGAGAGAGTGGAGGAGACTGGAAGAAGGTTAGCTCGGTACTGCGAGAGGTTCAACGTGC CATTTGATTACAAGGCGATTGCACAGAAATGGGAGACAATCAAGTACGAGGATCTCAACATCAATCCCGACGAGACCACCGTGGTGAATTGTTTATACAG GATGAGGAATCTCCCCGATGATACGGTGGCTGTCGACAGTGCTAGAGATTCCGTGTTGGGATTGATCCATAAGGTGAGACCTGAAGTGTTCATCCACGGG ATTGCGAACGGGAGCTACAACGCTCCCTTCTTCACCACCAGGTTTCGAGAGGCTTTGTTCCATTACTCTTCGCTGTTCGATATGTTCGAAGCTACCTTGC AACGGGAGGATGAGCATAGACTGCTGTTCGAGAGGGAGATGTACGGGAGGGATATAATGAACGTCGTGGCTTGCGAAGGATCGGAGCGAGTTGAGAGGCC CGAGACTTATAAGCAGTGGCAAACGAGGAACACGAGAGCCGGGTTCAGGCAGCTGCCGCTGAACGAGACCATTTTGAAGAAGGTGAGGAGTACTGTGAAA TCCGAATACGATAAGGATTTCGGTGTGGATGCTGATGGTCGCTGGATGTTGCAAGGTTGGAAAGGTCGGATCATCTATGGGCTTTCCGTCTGGAAACCTG TTGATAAGGATTATTAG
AA sequence Show only first row Show all	>Lus10016519 pacid=23144878 polypeptide=Lus10016519 locus=Lus10016519.g ID=Lus10016519.BGIv1.0 annot-version=v1.0 MAHYFANALETRLAGAATPKYTVDVKGKTPMAEILKAYQMFLNSCPFKRMSNFFANRTVFNLAENVSSLHIIDFGILYGFQWPCLIQRLSERPGGPPKLR ITGIDFPQPGFRPTERVEETGRRLARYCERFNVPFDYKAIAQKWETIKYEDLNINPDETTVVNCLYRMRNLPDDTVAVDSARDSVLGLIHKVRPEVFIHG IANGSYNAPFFTTRFREALFHYSSLFDMFEATLQREDEHRLLFEREMYGRDIMNVVACEGSERVERPETYKQWQTRNTRAGFRQLPLNETILKKVRSTVK SEYDKDFGVDADGRWMLQGWKGRIIYGLSVWKPVDKDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016519 [exp]	0	1
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	3.3	0.8800
AT3G63440		ATCKX6, CKX6, A...	CYTOKININ OXIDASE 6, cytokinin...		Lus10039574 [exp]	3.5	0.8279
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	4.5	0.8613
AT5G50240		PIMT2, AtPIMT2	Arabidopsis thaliana protein-l...		Lus10017776 [exp]	4.5	0.8591
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	4.8	0.8082
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019568 [exp]	5.1	0.8071
AT5G35732			unknown protein		Lus10006404 [exp]	5.7	0.8699
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10026637 [exp]	5.9	0.8544
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	9.5	0.8429
AT2G27260			Late embryogenesis abundant (L...		Lus10005216 [exp]	9.8	0.8652

Compare expression of checked genes

Lus10016519 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.