Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 745 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 701 / 0 GRAS GRAS family transcription factor (.1) AT2G29065 527 / 4e-179 GRAS family transcription factor (.1) AT2G37650 511 / 6e-172 GRAS SCL9 GRAS family transcription factor (.1) AT1G07520 499 / 3e-167 GRAS GRAS family transcription factor (.1) AT5G59450 473 / 3e-158 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 448 / 6e-151 GRAS GRAS family transcription factor (.1.2.3) AT1G50600 234 / 1e-67 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 227 / 4e-66 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 211 / 9e-61 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040790 [exp] 1341 / 0 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 579 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10004968 [exp] 550 / 0 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 548 / 0 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 545 / 0 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 540 / 0 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040787 [exp] 533 / 0 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 485 / 2e-162 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10016519 [exp] 445 / 2e-151 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032700 [exp] 907 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 856 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 671 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 658 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 610 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 576 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G242100 [exp] 566 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 551 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032900 [exp] 518 / 2e-175 AT1G07530 488 / 2e-163 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241900 [exp] 516 / 2e-174 AT1G07530 497 / 4e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016521 pacid=23144784 polypeptide=Lus10016521 locus=Lus10016521.g ID=Lus10016521.BGIv1.0 annot-version=v1.0 ATGGATTCAGAATTTATCGGATCATCTGGTCCAACCAATCGGTTCACGTTCGCCGATCAACCACTTTTCCCTGATCTATCCGCGGCAAACGGATTTAGAT TCAACACCTCCTCCTCAGCCATGGATTTCGGCGGCAATTTCATGAAAGACAACTCACTAACCTTGACTGATCTTGATGCTAGCAACTTTACTCAATCAAG CCCTGAAGGGGACTCTCCAACCGATGATAATGAATTTGGGGATACGGTTCTCAAGTATATAAACCAGATGCTGATGGAAGAGGACATGGAACAGAAGCCC TGTATGTTTCATGACTCTCTTCCTGTCCAAGCTGCTGAGAAATCTTTGTATAATGTGATTGGTGAGAAGTACCCTCCTCCTTCATCACCTGCGTATTCGT CTTCTTATGGTGACCAATTCTTGGTTGATAGTCCTGGGAATGAGTCTTCCTATAGTGTTGGTAGTGATTTCGGAGGGTCTAGCAGTTCGACGGGTAATAG CACTAGTTCGATCGATGTTCATTGGAATAACGAGCTGTTGGGGGATTCGAAAGCTAGGTTTATGCAGATGCCTCTGCCTACTGATTTTGTGTTCCAGTCT CCTCCTTTGTCTAGACAGAAGATTGAGAGGGTGAGTAATAGTAATGGTAATGTTGATGATGTGGTGATGAGTTCGTATGGTGGGAATTTTGCGATGCCGA ACTTTTTCAGTGGGAGTGAATTGGAGTTGCAGTTCAAGAGAGGGGTAGAGGAAGCTAACAAGTTCCTTCCTAAGGTGAGTCCACTGGTTATTGACTTGGA GAATAGGAATTTCACTCCGAAATTGGAGGTTGCTGTGAAAGCTGAAAGGGAAGAAGAGAACGATTTGCCTTATTTGAAGGTCAAGAAGAATCATGATAGG GGGGATGATGATTTCAAGGAAGAAAGGAGCAACAAGCAGTCTGCAGTATATGTCGATGAATCCGAGCTCTCTGAGATGTTTGACAAGTTACTCGTATGTA ACGGCGGGAAGGAACAAGAGAATCCATCATGCATCCATAACTATGACTCTCCAGAGAATGTAGCGAAATGCTCTCAAAAGAAGGCGAATCGTGGATCTAA TGGTAATAACAAGGGTCGGGCCAAGAGACAAGGAAGCAAGAAGGATGAAGTGGTGGATTTGAGGACCCTTCTATCTACATGTGCTCAAGCCATCTCTACT GATGACAGAAGAACTGCTAATGAATTGATGAGGCAGATCAGGCAGCACTCTTCACCGTTTGGTGATGGGTCTCAAAGGCTAGCTCATTGCTTTGCTAATG CCCTCGAAGCACGTCTTGCTGGAAATGGGACTCAGATATACATTGCATTGTCAGCTGACAAGACTTCTGCTGCAGATATGTTGAAAGCTTATCAAGCTTA CATTACAGCCTGCCCGTTTAATAAAGTTGCCATTATCTTTGCAAACCAGAGCATTATGCATGCAGCTTCAGATGCCAATGCAAGCACAGTTCATATCATC GATTTCGGTATCTTGTATGGTTTCCAGTGGCCTGCTTTCATCCACCGCCTTTCGAAAAGACCGGGCGGACCTCCTACACTTCGGATTACAGGCATAGAGC TTCCCCAGAGTGGGTTTCGGCCGGGGGAAAGAGTTCAAGCAACGGGGAGGAGATTGGCTAAGTACTGTGAACGGCATAATGTCCCTTTCGAGTATAATGC CATAGCAAAGAAATGGGAGAACATTCAACTTGACGAGCTGAAAATTAACAAGGGTGAGTTTCTTGCTGTGAATTGCCTGTTTCGAGGTAAGAACCTGCTC GATGAGACGGTATTAGTCAGCAGTCCGAGAGATGCTGTTCTTAGACTGATAAGGATGAAAAATCCAGACATATTCGTTCATGCTATCATGAACGGATCGT ACAATGCACCATTTTTCATGACGAGGTTTCGAGAATCGCTCTTCCATTTCTCGTCCTTGTTCGACATGTTGGATACGAACATGGGTCGTGAGGATCAGAT GAGGATGAAGTTTGAGAAAGAGTTCTACGGCCGGGAGGCGATCAATGTGATGGCTTGCGAAGGGTCGGAGAGGGTTGAGAGACCCGAGACATACAAGCAA TGGCAGGTCCGAAGCACGAGGGCTGGGATGAAGCAGCTCCCTCTAGACCCTGTCATGATGAAGAGGCTGAAATGCAAGGTGAGAGTGAAATACCATGAGG ATTTTGTGGTGAATGAAGATGGCGAATGGCTGTTGCAGGGTTGGAAGGGGCGAGTTATCTACGCTTCCTCGGCTTGGATTCCTGCATGA
AA sequence Show only first row Show all	>Lus10016521 pacid=23144784 polypeptide=Lus10016521 locus=Lus10016521.g ID=Lus10016521.BGIv1.0 annot-version=v1.0 MDSEFIGSSGPTNRFTFADQPLFPDLSAANGFRFNTSSSAMDFGGNFMKDNSLTLTDLDASNFTQSSPEGDSPTDDNEFGDTVLKYINQMLMEEDMEQKP CMFHDSLPVQAAEKSLYNVIGEKYPPPSSPAYSSSYGDQFLVDSPGNESSYSVGSDFGGSSSSTGNSTSSIDVHWNNELLGDSKARFMQMPLPTDFVFQS PPLSRQKIERVSNSNGNVDDVVMSSYGGNFAMPNFFSGSELELQFKRGVEEANKFLPKVSPLVIDLENRNFTPKLEVAVKAEREEENDLPYLKVKKNHDR GDDDFKEERSNKQSAVYVDESELSEMFDKLLVCNGGKEQENPSCIHNYDSPENVAKCSQKKANRGSNGNNKGRAKRQGSKKDEVVDLRTLLSTCAQAIST DDRRTANELMRQIRQHSSPFGDGSQRLAHCFANALEARLAGNGTQIYIALSADKTSAADMLKAYQAYITACPFNKVAIIFANQSIMHAASDANASTVHII DFGILYGFQWPAFIHRLSKRPGGPPTLRITGIELPQSGFRPGERVQATGRRLAKYCERHNVPFEYNAIAKKWENIQLDELKINKGEFLAVNCLFRGKNLL DETVLVSSPRDAVLRLIRMKNPDIFVHAIMNGSYNAPFFMTRFRESLFHFSSLFDMLDTNMGREDQMRMKFEKEFYGREAINVMACEGSERVERPETYKQ WQVRSTRAGMKQLPLDPVMMKRLKCKVRVKYHEDFVVNEDGEWLLQGWKGRVIYASSAWIPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10016521 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	1.4	0.8639
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10040270 [exp]	3.9	0.7999
AT3G17470		ATCRSH	Ca2+-activated RelA/spot homol...		Lus10042894 [exp]	5.8	0.8607
AT1G53210			sodium/calcium exchanger famil...		Lus10028144 [exp]	15.8	0.7847
AT3G44630			Disease resistance protein (TI...		Lus10042777 [exp]	19.7	0.7765
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Lus10016011 [exp]	21.0	0.7945
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Lus10020365 [exp]	21.8	0.8236
AT1G12710		ATPP2-A12	phloem protein 2-A12 (.1)		Lus10024494 [exp]	22.3	0.7567
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10028770 [exp]	23.9	0.8012
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	24.2	0.8217

Compare expression of checked genes

Lus10016521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.