Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60340 213 / 3e-71 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040792 [exp] 299 / 4e-105 AT5G60340 258 / 8e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109400 [exp] 250 / 7e-86 AT5G60340 231 / 4e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G228500 [exp] 249 / 1e-85 AT5G60340 228 / 5e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10016525 pacid=23144887 polypeptide=Lus10016525 locus=Lus10016525.g ID=Lus10016525.BGIv1.0 annot-version=v1.0 ATGGCGGGAGAAGCAAAGAGGACGAAACCAAACATACTGATAACGGGAACACCAGGGACCGGGAAAACGACGACGTCTTCAGCTTTGGCGGAGGCGTTGC AGCTCCGCCACATCAACATCGGAGATTTAGTAAAGGAGAAGAAGTTGCACGACGGCTGGGACGATCAATTCGAATGCCATGTCATCAACGAGGATCTGGT TTGCGATGAAATAGAGGACGCTATGGAAGAAGGAGGGAACATAGTGGACTACCACGGCTGCGATTTTTTCCCGGAGCGGTGGTTCGACCGGGTGGTGGTT CTCCAAACCGAAAACTCAGTGTTGTTTGACCGCTTGAGCAAGAGGGGATACTCGGAGACCAAGGTTAAGAACAACATAGAGTGCGAGATCTTCCAAGTAC TGCTGGAGGAGGCCAAAGATAGCTACCCTGAACACATTGTTGTCGCTCTTCGTAGTGATTCGGTTGAAGATGTTTCGAGTAATGTCGAGTCTCTTTCGGA ATGGTTCAGGAACTGGCAACCTGCTGCTTCTTCCTCCTGA
AA sequence Show only first row Show all	>Lus10016525 pacid=23144887 polypeptide=Lus10016525 locus=Lus10016525.g ID=Lus10016525.BGIv1.0 annot-version=v1.0 MAGEAKRTKPNILITGTPGTGKTTTSSALAEALQLRHINIGDLVKEKKLHDGWDDQFECHVINEDLVCDEIEDAMEEGGNIVDYHGCDFFPERWFDRVVV LQTENSVLFDRLSKRGYSETKVKNNIECEIFQVLLEEAKDSYPEHIVVALRSDSVEDVSSNVESLSEWFRNWQPAASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60340			P-loop containing nucleoside t...		Lus10016525 [exp]	0	1
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	2.4	0.8012
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	4.2	0.8282
AT1G20430			unknown protein		Lus10034561 [exp]	4.2	0.8273
AT3G10090			Nucleic acid-binding, OB-fold-...		Lus10029320 [exp]	4.6	0.8244
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	7.4	0.8043
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10014951 [exp]	8.9	0.7892
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	9.8	0.8243
AT2G18400			ribosomal protein L6 family pr...		Lus10014306 [exp]	12.7	0.7827
AT4G18905			Transducin/WD40 repeat-like su...		Lus10015348 [exp]	14.0	0.7729
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	14.7	0.7993

Compare expression of checked genes

Lus10016525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.