Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48150 624 / 0 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 616 / 0 GRAS SCL5 scarecrow-like 5 (.1) AT2G04890 548 / 0 GRAS SCL21 SCARECROW-like 21 (.1) AT4G17230 502 / 5e-174 GRAS SCL13 SCARECROW-like 13 (.1) AT1G21450 418 / 3e-140 GRAS SCL1 SCARECROW-like 1 (.1) AT1G07530 238 / 8e-70 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT1G66350 230 / 6e-69 GRAS RGL1 RGA-like 1 (.1) AT3G03450 229 / 6e-68 GRAS RGL2 RGA-like 2 (.1) AT5G52510 228 / 1e-66 GRAS SCL8 SCARECROW-like 8 (.1) AT1G14920 224 / 2e-66 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012323 [exp] 648 / 0 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10006369 [exp] 629 / 0 AT5G48150 633 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10003772 [exp] 540 / 0 AT5G48150 439 / 2e-154 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10000539 [exp] 521 / 0 AT4G17230 617 / 0.0 SCARECROW-like 13 (.1) Lus10017554 [exp] 504 / 7e-175 AT4G17230 612 / 0.0 SCARECROW-like 13 (.1) Lus10035840 [exp] 506 / 8e-175 AT5G48150 498 / 2e-172 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10036623 [exp] 488 / 1e-168 AT5G48150 486 / 9e-169 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10042776 [exp] 418 / 1e-140 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1) Lus10029747 [exp] 416 / 1e-139 AT1G21450 682 / 0.0 SCARECROW-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G361700 [exp] 823 / 0 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.014G164400 [exp] 733 / 0 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.016G009700 [exp] 572 / 0 AT4G17230 675 / 0.0 SCARECROW-like 13 (.1) Potri.006G016200 [exp] 559 / 0 AT4G17230 641 / 0.0 SCARECROW-like 13 (.1) Potri.001G409500 [exp] 521 / 0 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.011G131100 [exp] 516 / 9e-179 AT1G50600 505 / 8e-174 scarecrow-like 5 (.1) Potri.005G186500 [exp] 428 / 2e-144 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 422 / 4e-142 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G326000 [exp] 275 / 3e-84 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.017G142400 [exp] 258 / 8e-78 AT5G52510 438 / 7e-146 SCARECROW-like 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016596 pacid=23143921 polypeptide=Lus10016596 locus=Lus10016596.g ID=Lus10016596.BGIv1.0 annot-version=v1.0 ATGCAAGCATCTCAGAACAATATGTTTGCTGGTGGGTCGGGCTTGTTCTTTAACCAGCCTTTGCAAGATAAGGAGTCTTATTGCTGGTCCTGCATTCAGA ATGTCCCTCACTATCCATGTTCTGAAGTTGACAAGACCCATCTCTCAGCTACAACTTGTCAGCAACACTGTACCGTAGAGTCCTCATCTGGAACTGGTGG CTCTGCTGCTCACAATTCTCCATCTGCTACCAGTTTGTCTACTAATGAGAGTGGTGTTTCCCAGCACAACTCCCACTCATATCCATCTGATGTTCATGAT TCCCCTGACCAGTCTAGTGGTTCGCCGACAAGTGAGTTTTATGTTACCCACAAGCTAAGGGAACTGGAAACTGCCATGCTAGGGCCTGATTCGGATATCC TCGATGCATTCAATGACATAATACCAACTGGAGGCAACCAAATCATAACAGAGGCTGATAAGTGGAAGTTTCTTGGGGAAATAATATCTAGAGGAGATCT GAGAGAAGGACTTTGCACTTGTGCACAGTTTCTTGAAGATGGAGATATGTACACAGTTGATTGGTTAATTGCTGAATTGCGCCGTATGGTGTCAGTATCT GGAGAGCCAATCCAGCGCTTGGGAGCCTATGTCGTAGAGGGTCTTGTCGCAAGGTTGGCATCCTCTGGAAGTGCCATCTACAAGGCCTTACGATGCAAGG AACCTGCACCTGCCAGCATGGAGCTTCTGTCATACATGCATCTGCTTTACGAGATATGCCCCTACTTCAAGTTTGGATACATGTCAGCAAATGGAGCGAT AGCTGAGGCGATGAAGGATGAGAACCGGATCCACATCATTGATTTCCAAATTGCACAAGGTACTCAGTGGATCACTTTAATCCAGGCTCTAGCTGCTCGG CCTGGAGGACCTCCACATATTCGAATTACGGGAATCGATGATTCGACATCAGCATATGCTCGCGGAGGGGGGCTTGACATGGTTGGTAAAAGGCTAACAA TGCTTGCACAACAATGCAAAGTTCCATTCGAGTTCCGTTCTGCTGGTGTACCGGCTTCTGAAATTCAAGTGGAGAATCTGAAGATCCAACCTGGAGAGGC GATTGCTGTTAACTTTGCGTTGGTGCTGCACCACATGCCAGATGAAAGCGTGGGGACCCAAAATCACCGCGACAGATTGCTAAGGCTAGTTAAGGGCTTA TCTCCCAAGGTAGTAGCTCTTGTTGAGCAGGAATCAAACACAAACACAGCTCCATTCTTAGCTCGATTCGTGGAGACACTAAACTACTATTCGGCCATAT TCGAGTCGATTGATGTGACTTTGCCAAGGGAGCATAAGGAGAGGATCAACGTAGAGCAGCATTGCCTGGCGAGGGAGGTGGTGAACATCATAGCTTGTGA GGGTGCTGAAAGAGTGGAACGTCACGAGCTTCTTGGGAAATGGAAATCACGCATTGCAATGGCAGGGTTTAAGCCATACCCGCTGAGTAGTTATGTGAAT GAGACCATCAGGACGCTGCTGGGAAACTACTCGAGCAAGTATAGACTTGAGGAGAAAGACGGAGCTCTATATCTGGGATGGATGGACCGTGACCTGGTGT CTTCTTGTGCATGGAGGTGA
AA sequence Show only first row Show all	>Lus10016596 pacid=23143921 polypeptide=Lus10016596 locus=Lus10016596.g ID=Lus10016596.BGIv1.0 annot-version=v1.0 MQASQNNMFAGGSGLFFNQPLQDKESYCWSCIQNVPHYPCSEVDKTHLSATTCQQHCTVESSSGTGGSAAHNSPSATSLSTNESGVSQHNSHSYPSDVHD SPDQSSGSPTSEFYVTHKLRELETAMLGPDSDILDAFNDIIPTGGNQIITEADKWKFLGEIISRGDLREGLCTCAQFLEDGDMYTVDWLIAELRRMVSVS GEPIQRLGAYVVEGLVARLASSGSAIYKALRCKEPAPASMELLSYMHLLYEICPYFKFGYMSANGAIAEAMKDENRIHIIDFQIAQGTQWITLIQALAAR PGGPPHIRITGIDDSTSAYARGGGLDMVGKRLTMLAQQCKVPFEFRSAGVPASEIQVENLKIQPGEAIAVNFALVLHHMPDESVGTQNHRDRLLRLVKGL SPKVVALVEQESNTNTAPFLARFVETLNYYSAIFESIDVTLPREHKERINVEQHCLAREVVNIIACEGAERVERHELLGKWKSRIAMAGFKPYPLSSYVN ETIRTLLGNYSSKYRLEEKDGALYLGWMDRDLVSSCAWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10016596 [exp]	0	1
AT3G56680			Single-stranded nucleic acid b...		Lus10038997 [exp]	2.4	0.9309
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	8.4	0.9080
AT3G19080			SWIB complex BAF60b domain-con...		Lus10019640 [exp]	9.2	0.8489
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10017968 [exp]	9.8	0.9105
AT3G56680			Single-stranded nucleic acid b...		Lus10027292 [exp]	9.9	0.9152
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	11.8	0.8759
AT1G17370		UBP1B	oligouridylate binding protein...		Lus10011924 [exp]	13.0	0.8947
AT4G25030			unknown protein		Lus10033276 [exp]	13.2	0.8481
AT3G14160			2-oxoglutarate-dependent dioxy...		Lus10033471 [exp]	15.1	0.8937
AT1G67580		CDKG;2	Protein kinase superfamily pro...		Lus10015816 [exp]	15.9	0.8986

Compare expression of checked genes

Lus10016596 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.