Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13620 166 / 1e-48 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 126 / 1e-34 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT4G39780 124 / 7e-34 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 121 / 2e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G78080 121 / 3e-32 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT2G22200 114 / 3e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 115 / 8e-30 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT5G65130 108 / 1e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G28140 103 / 6e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16770 97 / 7e-24 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007124 [exp] 432 / 4e-154 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10033463 [exp] 123 / 8e-33 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 122 / 2e-32 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 119 / 2e-32 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10019665 [exp] 119 / 2e-32 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 121 / 4e-32 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 120 / 1e-31 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10039809 [exp] 113 / 1e-28 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10018578 [exp] 112 / 3e-28 AT2G20880 195 / 3e-59 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G055400 [exp] 153 / 4e-43 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 149 / 1e-41 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.005G168700 [exp] 125 / 2e-33 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G077300 [exp] 125 / 3e-33 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 124 / 1e-32 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 122 / 1e-32 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.013G135600 [exp] 112 / 3e-28 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 110 / 2e-27 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 94 / 1e-22 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 92 / 3e-22 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10016669 pacid=23144006 polypeptide=Lus10016669 locus=Lus10016669.g ID=Lus10016669.BGIv1.0 annot-version=v1.0 ATGGAAAATTTCATGTTCAAAGACCTCCAACTGTCTTGTCATCATCTTCGTGGAGGAAGAGAAGGCACATCAAATCACTCTTTTCTTCCGGATCCAACCA TTTGGACCTCTTCTATAACTCAACCTCATAATTGGGCTCCTGCAGCAGCAGCAGCAGGGGATCATCAAATTCAATCATCAGCTCCGATGAACAATCCTGT AAACTTCCTTGAATCATTTCCCAACCTCATGAAAGCTATGAAGCCCATCTCACTGGATTCTCCTCCTTCAGCAGCAAACAACTTCTCCAACCTCACTCTG TTTTCACGTCCCCTGTTTTCTCCGGTGGAGAAAATTGACCAGTCGCCGTCGTTTCTCCCAAGCAAGAGGTGGCTCAGTGCTAATAAGACGCAGCAGATGA AGTACAAGGCGGGAGGGAGGAGCGTGTCATCGGCGGGGAAGGTGTTCAGAGGGGTTCGGCAGAGGCATTGGGGGAAATGGGTGGCGGAGATAAGGCTGCC GAGGAACAGGACGAGGGTTTGGTTGGGGACGTTCGATACAGGGGAAGAGGCGGCGATGGCGTACGATACGGCGGCGTATATGCTGAGAGGGGAATACGCA CATTTGAATTTCCCAGAACTAAAGCACCAGCTCAAGGCCAATGGAACCACGGCTGCTCTTCTGGAAGCCAAGCTGGAAGCGATGAAAAAGAAGAAGGAAT TGACGGAGCAGCAGAATCCGGCGGAGAAGGAGGAACCAGTAGTGAATTCTGACAATAATAATAGTAATAGTAATAATGTTGCGGGGGTTCAATTGAGTAG AATGCCTTCGTTGGATATGGACATGATCTGGGATGCTCTGCTAGTTCATGACTCCTCTTCCTGA
AA sequence Show only first row Show all	>Lus10016669 pacid=23144006 polypeptide=Lus10016669 locus=Lus10016669.g ID=Lus10016669.BGIv1.0 annot-version=v1.0 MENFMFKDLQLSCHHLRGGREGTSNHSFLPDPTIWTSSITQPHNWAPAAAAAGDHQIQSSAPMNNPVNFLESFPNLMKAMKPISLDSPPSAANNFSNLTL FSRPLFSPVEKIDQSPSFLPSKRWLSANKTQQMKYKAGGRSVSSAGKVFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTGEEAAMAYDTAAYMLRGEYA HLNFPELKHQLKANGTTAALLEAKLEAMKKKKELTEQQNPAEKEEPVVNSDNNNSNSNNVAGVQLSRMPSLDMDMIWDALLVHDSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13620	AP2_ERF		Integrase-type DNA-binding sup...		Lus10016669 [exp]	0	1
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10005885 [exp]	5.2	0.8833
					Lus10002087 [exp]	5.5	0.9088
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	12.3	0.8874
AT1G13620		RGF2	root meristem growth factor 2,...		Lus10019202 [exp]	15.3	0.8403
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10002930 [exp]	16.2	0.8383
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	16.4	0.8811
AT1G47980			unknown protein		Lus10037797 [exp]	18.0	0.8483
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Lus10023620 [exp]	18.2	0.7872
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Lus10026820 [exp]	19.0	0.8247
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	19.8	0.8678

Compare expression of checked genes

Lus10016669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.