Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13640 330 / 3e-113 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 322 / 3e-110 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 206 / 4e-64 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G04030 198 / 1e-60 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 181 / 1e-53 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G12730 170 / 1e-51 GARP Homeodomain-like superfamily protein (.1) AT1G69580 169 / 8e-50 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 166 / 3e-49 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G45580 164 / 1e-48 GARP Homeodomain-like superfamily protein (.1) AT4G28610 145 / 4e-40 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007132 [exp] 518 / 0 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10020264 [exp] 204 / 2e-62 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10002629 [exp] 203 / 4e-62 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10001844 [exp] 204 / 8e-62 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 203 / 9e-62 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10038735 [exp] 178 / 2e-54 AT3G24120 177 / 8e-55 Homeodomain-like superfamily protein (.1.2) Lus10010404 [exp] 179 / 3e-54 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10036758 [exp] 177 / 1e-53 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 177 / 1e-53 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G314800 [exp] 445 / 1e-158 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 438 / 1e-155 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.016G001200 [exp] 203 / 2e-63 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.019G032700 [exp] 204 / 1e-62 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.013G060200 [exp] 203 / 3e-62 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.008G081800 [exp] 195 / 1e-59 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 193 / 6e-59 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 185 / 9e-57 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.008G087600 [exp] 181 / 1e-54 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.003G100100 [exp] 178 / 3e-54 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016676 pacid=23143919 polypeptide=Lus10016676 locus=Lus10016676.g ID=Lus10016676.BGIv1.0 annot-version=v1.0 ATGCCGCTTGACGGAAGTAACCTAGGAGGAGGAGGTGGAGGAGGAGCAGCAGCTGGACACCTGGACTACCAGCGCTCATTGGATGGGACCAATCTCCCTG GAGATGCGTGCTTGGTTCTCACCACGGATCCAAAGCCCAGGCTCCGCTGGACTACCGAGCTCCATGACCGATTCGTCGACGCCGTTACTCAGTTGGGCGG TCCTGACAAAGCAACTCCTAAAACTATAATGAGGACAATGGGGGTTAAAGGCCTAACTCTTTATCACTTGAAATCCCACCTACAGAAATACAGGTTGGGA AGGCAATCCTGCAAGGAAACGACTGAGAGCTCTAAGGATGTTGGCATTGCGGCATCTATTGCAGAAAGTCAGGACACTGGCTCGTCTACATCAACATCAT CTAGAATGGCTGCACAAGATCTGAATGACGGTTACCAGGTGACTGAGGCTTTGCGTGTACAGATGGAAGTTCAAAGAAGATTACATGAACAACTAGAGGT GCAACGCAGACTCCAACTAAGGATTGAAGCCCAGGGGAAATATCTACAGTCAATACTGGAGAAAGCGTGCAAAGCTTTGAACGACCAGGCAGCTGCAACT GTTGGACTTGAAGCCGCAAGGGAGGAGCTTTCAGAGTTAGCAATCAAAGTTTCCAATGAATGTCAAGGAATGGCACCCATGTACACCATAAAGATGCCGT CTTTACCCGAACTTGCTGCTGCTTTAGAGAGCAGAAGTGCTTTGAATATGCCTGCTCGAATAGGGGACTGCTCTACTGAGAGTTGCTTGACTTCAATTGG GAGTCCAGCTTCTCCCATGGGTATGTCTCCACAAGCTGCTGCTGCTGTTGCTGCCATGAAGAAAAGACCAAGATCTGTCTTTGGCAATGGAGATTCACTC CTGTTGGATGGCAGCATGCGTCAAGAAGTCGAATGGATGATGCATAACATGGCATGA
AA sequence Show only first row Show all	>Lus10016676 pacid=23143919 polypeptide=Lus10016676 locus=Lus10016676.g ID=Lus10016676.BGIv1.0 annot-version=v1.0 MPLDGSNLGGGGGGGAAAGHLDYQRSLDGTNLPGDACLVLTTDPKPRLRWTTELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLG RQSCKETTESSKDVGIAASIAESQDTGSSTSTSSRMAAQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRRLQLRIEAQGKYLQSILEKACKALNDQAAAT VGLEAAREELSELAIKVSNECQGMAPMYTIKMPSLPELAAALESRSALNMPARIGDCSTESCLTSIGSPASPMGMSPQAAAAVAAMKKRPRSVFGNGDSL LLDGSMRQEVEWMMHNMA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10016676 [exp]	0	1
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Lus10032267 [exp]	1.0	0.9436
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10035400 [exp]	3.5	0.8858
AT2G25270			unknown protein		Lus10001929 [exp]	4.0	0.9229
AT1G76660			unknown protein		Lus10016050 [exp]	4.0	0.8972
AT5G67200			Leucine-rich repeat protein ki...		Lus10041101 [exp]	5.7	0.9193
AT2G37560		ATORC2	origin recognition complex sec...		Lus10024412 [exp]	6.6	0.8599
AT2G31220	bHLH	bHLH010	basic helix-loop-helix (bHLH) ...		Lus10007101 [exp]	7.2	0.8718
AT3G57070			Glutaredoxin family protein (....		Lus10042021 [exp]	7.4	0.8932
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10033131 [exp]	7.7	0.8938
AT2G25270			unknown protein		Lus10001945 [exp]	7.7	0.9073

Compare expression of checked genes

Lus10016676 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.