Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 1457 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 1396 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 716 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT2G25140 679 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 671 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 608 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 409 / 8e-132 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 299 / 9e-94 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 69 / 1e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 62 / 1e-09 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036017 [exp] 1714 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 1269 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 787 / 0 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032514 [exp] 727 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043013 [exp] 725 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10041018 [exp] 646 / 0 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10030705 [exp] 633 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 606 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10021159 [exp] 595 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 1508 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 1499 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 729 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 712 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.006G262700 [exp] 669 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 659 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.017G090600 [exp] 640 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G056900 [exp] 616 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.015G057000 [exp] 476 / 1e-153 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 435 / 3e-143 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10016723 pacid=23149072 polypeptide=Lus10016723 locus=Lus10016723.g ID=Lus10016723.BGIv1.0 annot-version=v1.0 ATGGCGAGGTTACTATCTCGTTCCATCAATACTACTTATCTGGCTCTTCCAAAGGGAATCCAATCTCAGAGATGTGATAATTCAAAGACTTCTTCTGTCA AGACGATGGCTTGTTTACAGGCACCTGTTTATACATTGAGAGGTTTCTCCGGACTACGGAGTTCCAACAGTTTAAATACAATGATGCAACCTGTACAAGA TTTTCGATCCAGAGTTGCTGTGACTATGTCACCTAAGCAAAGGAGAGGTAAAAGATTTGTTGCTAGAGCAATGTTTGAACGGTTCACAGAAAAAGCTATC AAAGTTATCATGCTTGCCCAAGAGGAGGCAAGACGGCTTGGTCACAACTTCGTTGGTACAGAGCAAATCTTGTTGGGTCTTATTGGTGAGGGCACTGGCA TTGCTGCTAAGGTCCTCAAATCTATGGGAATCAATCTTAAAGATGCCCGCGTAGAAGTGGAAAAAATTATTGGAAGAGGCAGTGGATTTGTTGCTGTTGA GATTCCGTTTACTCCCCGTGCCAAGCGTGTTTTAGAACTGTCACTTGAAGAAGCCCGCCAACTTGGTCATAACTACATTGGATCCGAGCACTTGCTCCTT GGCCTGCTTCGTGAAGGTGAGGGTGTTGCAGCTCGTGTTATTCGCATGGTTGGCGAGAGCAATGAAGTTACTGCTAATATTGGACCAAACACTGGGGATA CAAAGATGCTAACTCTTGAGGAGTATGGAACTAATTTGACCAAGCTTGCTGAGGAGGGAAAATTAGATCCTGTTGTTGGAAGGCAGCCACAGATAGAGCG CGTTGTCCAAATCCTGGGTCGAAGGACTAAGAATAATCCTTGTCTTATTGGAGAGCCAGGTGTTGGTAAAACAGCAATTGCTGAGGGTCTTGCTCAACGA ATAGCAAGTGGTGATGTCCCTGAAACTATTGAAGGGAAGAAGGTTATTACATTGGATATGGGTCTTCTTGTTGCTGGAACAAAATACCGTGGTGAGTTTG AGGAAAGGCTCAAGAAGTTGATGGAGGAAATCAGGCAAAGTGATGAAATCATTCTCTTCATTGATGAGGTGCATACCTTAATTGGCGCCGGGGCTGCAGA AGGGGCTATTGATGCTGCTAATATCTTGAAACCTGCTCTTGCTAGGGGTGAATTGCAGTGCATTGGAGCTACAACCTTGGACGAATACAGAAAGCATATT GAGAAGGACCCTGCATTGGAAAGACGATTCCAGCCTGTGAAAGTACCTGAGCCTACTGTTGACGAAAGTATTCAAATATTGAAAGGGCTCCGTGAGCGAT ATGAGATTCACCATAAGCTTCGCTACACAGATGAGGCCCTAGCAGCTGCTGCCCACCTATCACACCAGTACATCAGTGATCGGTTCTTGCCTGATAAGGC AATTGATTTGATTGACGAGGCTGGATCTCGGGTTCGTCTTCGTCATGCACAGGTCCCTGAGGAAGCCAAGGAGCTTGAGAAAGAGGTCAGGCAGATTATA AAAGAGAAGGACGAAGCTGTTCGCAACCAAGATTTTGAGAAGGCTGGAGAGCTGCGTGATAGAGAAATGGACCTCAAGGCACAGATCACAGCTATTGTGG AGAAAGGCAAGGAGATGAGCAAAGCGGAAACAGAGGCTGGGGAAGAAGGTCCGACTGTGACTGAAGCAGACATTCAGCACATTGTGTCTTCATGGACTGG AATTCCTGTTGACAAGGTGTCAAGTGATGAATCTGACCGTCTTCTGAAGATGGAAGAAACCTTACACAAGCGGGTCATTGGTCAGGATGAAGCTGTTGAA GCCATTAGCCGTGCTATACGCAGGGCCCGTGTTGGACTCAAGAACCCCAACCGGCCTATTGCTAGCTTCATCTTTTCTGGTCCAACTGGTGTTGGCAAAT CGGAACTGGCAAAATCACTTGCTGCCTACTATTTTGGCTCTGAAGAAGCAATGGTTAGACTTGACATGAGTGAGTTCATGGAAAGACACACAGTGTCTAA GCTCATAGGTTCACCTCCTGGGTATGTTGGTTACACAGAAGGTGGTCAGTTGACCGAAGCTGTTAGGCGTCGTCCTTATACTCTTGTGCTCTTTGATGAG ATAGAGAAAGCTCACCCTGATGTTTTCAACATGATGCTTCAAATCCTGGAGGATGGAAGATTAACTGACAGCAAGGGTAGAACGGTAGACTTCAAAAACA CGCTCTTGATCATGACTTCAAATGTGGGAAGCAATGTCATTGAGAAGGGAGGGAAACGTATAGGGTTTGACCTCGACTATGACGACAAGGACACGAGTTA TAACAGGATTAAGAGTCTTGTTTCAGAGGAACTGAAACAGTATTTCAGGCCTGAGTTCTTGAACAGATTGGATGAGATGATTGTGTTCAGACAGCTTACT AAGCTGGAGGTGAAGGAAATTGCAGATATAATGTTGAGGGAGGTGTTTAATCGGCTCAAGGGGAAAGAGATTGAACTTCAAGTGACGGAGAGGTTCAGAG AGCGAGTTGTGGACGAAGGTTACAACCCGAGCTATGGGGCGAGGCCTCTGAGAAGAGCGATAATGAGACTCCTGGAGGATAGCATGGCTGAGAAAATGCT TGCCGGGGAGATCAAAGAGGGGGACTCTGTGATCATGGATGTAGACTCTGATGGCAAAGTCATCGTTCTAAATGGAAGCAGCAGTGGGACCCCTGATGCC CTACCAGATATGTTATCTATTGCATGA
AA sequence Show only first row Show all	>Lus10016723 pacid=23149072 polypeptide=Lus10016723 locus=Lus10016723.g ID=Lus10016723.BGIv1.0 annot-version=v1.0 MARLLSRSINTTYLALPKGIQSQRCDNSKTSSVKTMACLQAPVYTLRGFSGLRSSNSLNTMMQPVQDFRSRVAVTMSPKQRRGKRFVARAMFERFTEKAI KVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLL GLLREGEGVAARVIRMVGESNEVTANIGPNTGDTKMLTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQR IASGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIRQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHI EKDPALERRFQPVKVPEPTVDESIQILKGLRERYEIHHKLRYTDEALAAAAHLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEAKELEKEVRQII KEKDEAVRNQDFEKAGELRDREMDLKAQITAIVEKGKEMSKAETEAGEEGPTVTEADIQHIVSSWTGIPVDKVSSDESDRLLKMEETLHKRVIGQDEAVE AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLAAYYFGSEEAMVRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTLVLFDE IEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSNVIEKGGKRIGFDLDYDDKDTSYNRIKSLVSEELKQYFRPEFLNRLDEMIVFRQLT KLEVKEIADIMLREVFNRLKGKEIELQVTERFRERVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAGEIKEGDSVIMDVDSDGKVIVLNGSSSGTPDA LPDMLSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10016723 [exp]	0	1
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	9.6	0.8286
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	9.8	0.8362
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10036017 [exp]	13.0	0.7994
AT2G33340		MAC3B	MOS4-associated complex 3B (....		Lus10014477 [exp]	16.6	0.7857
AT4G12640			RNA recognition motif (RRM)-co...		Lus10016070 [exp]	19.0	0.7692
AT1G04230			Protein of unknown function (D...		Lus10039489 [exp]	23.2	0.7673
AT2G21440			RNA-binding (RRM/RBD/RNP motif...		Lus10042589 [exp]	24.2	0.8195
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	29.3	0.7809
AT1G42440			unknown protein		Lus10013232 [exp]	30.3	0.8086
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	31.7	0.8132

Compare expression of checked genes

Lus10016723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.