Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50770 361 / 2e-122 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT5G50700 335 / 3e-112 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 335 / 3e-112 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50690 293 / 1e-96 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 293 / 1e-96 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47350 281 / 1e-91 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT4G10020 283 / 4e-91 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT3G47360 267 / 3e-86 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 96 / 2e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 86 / 1e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022441 [exp] 657 / 0 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10032556 [exp] 370 / 1e-125 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 356 / 3e-120 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 354 / 1e-119 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 350 / 5e-118 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10022442 [exp] 258 / 1e-82 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10041045 [exp] 256 / 6e-81 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10006178 [exp] 250 / 3e-79 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 249 / 3e-78 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 338 / 8e-114 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 332 / 9e-112 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 332 / 2e-111 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 328 / 3e-110 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048900 [exp] 308 / 1e-101 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 300 / 7e-99 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.013G100200 [exp] 283 / 4e-92 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.019G073200 [exp] 273 / 6e-88 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.007G086600 [exp] 87 / 2e-18 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.011G022500 [exp] 81 / 8e-17 AT4G05530 373 / 5e-132 SHORT-CHAIN DEHYDROGENASE/REDUCTASE A, indole-3-butyric acid response 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10016748 pacid=23149150 polypeptide=Lus10016748 locus=Lus10016748.g ID=Lus10016748.BGIv1.0 annot-version=v1.0 ATGGCTGGTAAAGCAGTTGTCATCACCGGAACATCTTCAGGAATCGGCGAGCAATTAGCTTACGAGTACGCAAGGAGAAGAGCGCGGTTAGCCATAGCGG CAAGCAGGGAAGATCGTCTACAGAGTGTGGCAATGAAAGCAAGGCAATTGGGGAAATGTAAAGGACAGATCGTGGTCGTTTCTTCGGTTGCAGGATGTGT ACCCTGTCCTAAGATCGGTTTCTATGAGGCAAGTAAGGCTGCACTCATAAGCTGGTTCAAGGAACTGAGAATAGAAGTTGGTTCAGATATTGGGATTACA ATAGTCACCCCTGGTTTAGTAACATCAGAGATGTCCCAAGCTGCAGAAGTTCGATCAGAGGGCGATAATGATGCAGTGAACAAGTTGATGAACATTGTAT TAACTCCCGTATCCCTGCTGACATTATTTGGGTTCATAAATCATGTATATGGAGTGTATACTAGAGTAGAATCCATGTTGAGGACAATATTCAAGGAAGA TGTCTCAGGAAAAGTGGTGCTGATAACAGGAGCATCTTCTGGCATAGGCGAGCATCTGGCTTACGAGTACGCAAAGAAAGGAGCGTGTCTAGCTCTGGTT GCTAGAAGAGAAGAGAAGCTCCGTGCTGTTGCAGCCAAAGCTGAGGAGATGGGAAGCCCTTATGCTCTAGTCCTCAAGGGAGACGTCACCAATGTTGAAG ACTGTCAGCAGTTTGTGAATGAAGCAGCTCGCCTATTTGGCCGACTGGATCACCTGGTTACAAACGCCGGAGTTTCTCCGATGACAATGTTCGAGGATAT CCCTGATATCACCAACCTTGCACCTGCTATGGATATAAACTTCTGGGGATCGGTATATAGCTCGTATTTCGCAATTCCTCATCTGAAGCAAAGCCATGGC AAGATCATTGTGGTAGCTTCAGTTGCCTCGTGGTTGCCTGCTCCAAGGATGAGCTTCTACAATGCAAGTAAAGCAGCACTTGTTGCCATGTACGAAACAC TGAGAGTGGAACTTGGGACACAAGTTGGAATAACAATTGTCACCCCTGGATTAATCCACTCTGAAATGACAGACGGCAAGTTCTTGAACCAACAAGGCCG CCTTCAAATGGATAAAGAAATTAGAGATATTCAAGTGAGTGTGATGCCATTAGAGTCAACTGCAGAATGTGCCAAAGCAATTGTTAATAGTGCATGTAGG GGAGATAAGTACTTGATAGTGCCAGAATGGTACCGATCCTTGTTTTGGTTCAAGGCTTTTTGCCCTGATGTCATAGAGTGGAGCAACCGCTTCTATTTGC TCCCCTCACCTGGCCGATCTGCAAGCGAAGCCCCAAGCAAGAAGATTGCAGACATAGCAAATCAATTTACCAAATCTATCTTCAGTTTCCTGGAGAATCT CCCAAAGCTAGCCAGCGGAAGCTTCCTGCTTGATGAATACTGA
AA sequence Show only first row Show all	>Lus10016748 pacid=23149150 polypeptide=Lus10016748 locus=Lus10016748.g ID=Lus10016748.BGIv1.0 annot-version=v1.0 MAGKAVVITGTSSGIGEQLAYEYARRRARLAIAASREDRLQSVAMKARQLGKCKGQIVVVSSVAGCVPCPKIGFYEASKAALISWFKELRIEVGSDIGIT IVTPGLVTSEMSQAAEVRSEGDNDAVNKLMNIVLTPVSLLTLFGFINHVYGVYTRVESMLRTIFKEDVSGKVVLITGASSGIGEHLAYEYAKKGACLALV ARREEKLRAVAAKAEEMGSPYALVLKGDVTNVEDCQQFVNEAARLFGRLDHLVTNAGVSPMTMFEDIPDITNLAPAMDINFWGSVYSSYFAIPHLKQSHG KIIVVASVASWLPAPRMSFYNASKAALVAMYETLRVELGTQVGITIVTPGLIHSEMTDGKFLNQQGRLQMDKEIRDIQVSVMPLESTAECAKAIVNSACR GDKYLIVPEWYRSLFWFKAFCPDVIEWSNRFYLLPSPGRSASEAPSKKIADIANQFTKSIFSFLENLPKLASGSFLLDEY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	0	1
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	2.8	0.8239
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	3.3	0.8586
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	5.5	0.8303
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009827 [exp]	7.7	0.8054
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	8.9	0.8128
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	9.9	0.8047
					Lus10038255 [exp]	10.6	0.7985
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	11.2	0.8258
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10022212 [exp]	14.1	0.7524
AT1G12650			unknown protein		Lus10005657 [exp]	19.7	0.7688

Compare expression of checked genes

Lus10016748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.