Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66920 836 / 0 SKS17 SKU5 similar 17 (.1) AT4G22010 682 / 0 SKS4 SKU5 similar 4 (.1) AT1G76160 678 / 0 SKS5 SKU5 similar 5 (.1) AT1G21850 668 / 0 SKS8 SKU5 similar 8 (.1) AT2G23630 665 / 0 SKS16 SKU5 similar 16 (.1) AT1G21860 660 / 0 SKS7 SKU5 similar 7 (.1) AT4G38420 655 / 0 SKS9 SKU5 similar 9 (.1) AT4G37160 654 / 0 SKS15 SKU5 similar 15 (.1) AT1G41830 647 / 0 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1) AT3G13400 598 / 0 SKS13 SKU5 similar 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022465 [exp] 1060 / 0 AT5G66920 829 / 0.0 SKU5 similar 17 (.1) Lus10035282 [exp] 676 / 0 AT1G76160 798 / 0.0 SKU5 similar 5 (.1) Lus10030045 [exp] 674 / 0 AT1G76160 796 / 0.0 SKU5 similar 5 (.1) Lus10019642 [exp] 665 / 0 AT4G37160 751 / 0.0 SKU5 similar 15 (.1) Lus10015545 [exp] 665 / 0 AT4G22010 889 / 0.0 SKU5 similar 4 (.1) Lus10020022 [exp] 665 / 0 AT4G22010 895 / 0.0 SKU5 similar 4 (.1) Lus10034560 [exp] 659 / 0 AT1G76160 894 / 0.0 SKU5 similar 5 (.1) Lus10005649 [exp] 654 / 0 AT1G76160 889 / 0.0 SKU5 similar 5 (.1) Lus10021832 [exp] 636 / 0 AT1G76160 865 / 0.0 SKU5 similar 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G038300 [exp] 872 / 0 AT5G66920 822 / 0.0 SKU5 similar 17 (.1) Potri.007G038200 [exp] 681 / 0 AT4G37160 771 / 0.0 SKU5 similar 15 (.1) Potri.002G227600 [exp] 675 / 0 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.005G247700 [exp] 668 / 0 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 667 / 0 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 660 / 0 AT1G76160 902 / 0.0 SKU5 similar 5 (.1) Potri.014G154500 [exp] 659 / 0 AT4G22010 780 / 0.0 SKU5 similar 4 (.1) Potri.004G010100 [exp] 657 / 0 AT4G22010 844 / 0.0 SKU5 similar 4 (.1) Potri.001G000500 [exp] 614 / 0 AT1G55570 853 / 0.0 SKU5 similar 12 (.1) Potri.003G224100 [exp] 602 / 0 AT1G55570 855 / 0.0 SKU5 similar 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10016770 pacid=23149050 polypeptide=Lus10016770 locus=Lus10016770.g ID=Lus10016770.BGIv1.0 annot-version=v1.0 ATGTACCGAATTCTCCACCATCGAAATGGCTTCAATGCGGAAGGGGATGAAGATTTCTCAGCAAGTTGGCCTGAGATTCATGCTCCTGAAGTTGAGGTGT TGGTTCTCAACTTTAAGACCCAGAATTATGCGTTACCCAAGTTTATTGAAAGAATGGAGAAGCTGAAGGTTCTGATTGTTACAAATCATGGGATGTGTCC AGCTAACTTGAGTAACTTCCGCAATCTTGATTCCCTATCTAATCTTAAGAGAATTAGGCTCGAAAAGATTTTGGTCCCACCAGATTTCCTTCCAGCCATT GCATTAAGGAAGCTAGAAAAGATAGCCTTGTTCATGCGCAACATTGGTGAAGCTTTTAGCAATATAGACCTTGAGGCAGACTCATTCCCAAACTTGGACG TGATCGACATTGACTACTGTAGCGATTTGATGGGGTTACCAGTTTGGTTGTTTGAATCACTCCAAATGAGGAAGCTGAGAATCAGCAACTGTCAAAACCT GTCAGAACTGCCAGAAGAACTAGGCAACTTGGGAAATTTGGAGGAGTTGAGGTTTAGTTCCTGTATAGAGTTGTCAGAGTTGCCAGAGACTATTGGAAAC CTACGGAAGTTGACGACTCTGGACATATCCGATTGTGCAAGCATAAAGAAGCTGCCTGAACAAATCAGTGAGCTTTGCAACCTGAGGAAGCTGTACATGA TAGAATGTGACCGCTGCGAACTACCGGCATCGTGTAAATCTGTTGTGACTGCAATGGGGATGCTCCACTTACTGCTGGGACTACTATTGGCGGCTATTTG GAGCGTTTCTTTGGTCTGTGCAGATGATCCATATCGTTTCTACACTTGGACTGTCACTTATGGCACCACTTCTCCTCTCGGAGTTCCTCAAAGGGTTATT CTCATCAATGGCCAATTCCCTGGTCCTAGATTGGATGTGGTGACTAATGACAACCTTGTCCTAAACCTCATCAACAAGCTCGATGTGCCTTTCCTCTTGA CCTGGAATGGGATTAAGCAGAGGAAGAATTCATGGCAAGATGGAGTTGTTGGCACAAACTGCCCTATTCTTCCGGGCGCTAACTACACTTACATTTTCCA ACCAAAAGATCAGATTGGATCCTTTACATATTTCCCATCTACTGGATTCCACAGAGCAGCTGGTGGGTATGGAGCCATCAATGTCTACTCCAGGCCCAGA ATTCCTGTTCCTTATGCAACTCCCGATGGGGATTTCACTCTCCTTGTTGGTGATTGGTACAAGACTGACCATAAGATATTACAGGCTTCTTTGGATTTAG GCAAGTCTCTACCTCTACCAGATGGTGTCCTCATAAATGGTCAAACTCAAGCCACGTTCAGTGGTGATCAAGGGAAAACCTACAAGTTGAGGGTATCCAA TGTGGGATTGAAGACTACCCTAAACTTTAGGATCCAAGGCCACAGCATGAAGCTAGTTGAGGTGGAAGGATCTCATGTTATTCAGAACATGTATGACTCT CTTGACGTACATGTTGGCCAATCTGTGAATGTCTTAGTGACACTCAACCAACCTCCTAAGGATTACTACATTGTCGCATCCACTCGCTTTTCTCCTAAAA AGCTACTCGCATCTGGCATTCTGCACTACACAAACTCACAAGTTCCTGTATCTGGACCCCTCCCCGCAGAACCAGCTTTCCAGCTTCATGGCTCTATGGA GCAGGCCAGAACTTATCGGTGGAACTTAACAGCAAATGCAGCCAGGCCAAATCCTCAGGGCTCCTTCCATTATGGAAAGATAACCACCACAAAGACAATC ATCTTGTCAAATTCAGCACCTTTAATCAACGGGAAGCAACGTTACGCTGTCAACGGTGTCTCGTATGTTAATGCTGATACACCACTTAAACTTGCGGACT ACTTCAACATCCCTGGAGTTTTCAGTACCACCTCTCTCCAAACAGTCCCTTCTGGCGGTGCTGCAACTGTTGCTACTTCTGTCATCCCAACTTCCCTTCA TGATTTCATAGAAGTCGTATTCCAGAACAACGAAAACGCAATGCAATCTTGGCATCTCGATGGCTACGATTTCTGGGTTGTTGGCTTTGGTTCAGGCCAG TGGGAACCGTCTAAGAGAAACACTTACAACCTAGTTGATGCTCTTACCAGACACACTACTCAGGTGTATCCAAACTCGTGGACAAGTATACTGGTTTCAC TTGACAACCAAGGAATGTGGAACATGAGATCTGCTATATGGGAGAGGCAATATCTTGGCCAGCAATTCTATCTAAGGGTGTGGTCTCCTGTCCAGAGCCT TGCCAATGAATATTATATCCCTACCAATGCTCTCCTATGCGGCAAAGCCGTAGGGAGAAGCCATTAG
AA sequence Show only first row Show all	>Lus10016770 pacid=23149050 polypeptide=Lus10016770 locus=Lus10016770.g ID=Lus10016770.BGIv1.0 annot-version=v1.0 MYRILHHRNGFNAEGDEDFSASWPEIHAPEVEVLVLNFKTQNYALPKFIERMEKLKVLIVTNHGMCPANLSNFRNLDSLSNLKRIRLEKILVPPDFLPAI ALRKLEKIALFMRNIGEAFSNIDLEADSFPNLDVIDIDYCSDLMGLPVWLFESLQMRKLRISNCQNLSELPEELGNLGNLEELRFSSCIELSELPETIGN LRKLTTLDISDCASIKKLPEQISELCNLRKLYMIECDRCELPASCKSVVTAMGMLHLLLGLLLAAIWSVSLVCADDPYRFYTWTVTYGTTSPLGVPQRVI LINGQFPGPRLDVVTNDNLVLNLINKLDVPFLLTWNGIKQRKNSWQDGVVGTNCPILPGANYTYIFQPKDQIGSFTYFPSTGFHRAAGGYGAINVYSRPR IPVPYATPDGDFTLLVGDWYKTDHKILQASLDLGKSLPLPDGVLINGQTQATFSGDQGKTYKLRVSNVGLKTTLNFRIQGHSMKLVEVEGSHVIQNMYDS LDVHVGQSVNVLVTLNQPPKDYYIVASTRFSPKKLLASGILHYTNSQVPVSGPLPAEPAFQLHGSMEQARTYRWNLTANAARPNPQGSFHYGKITTTKTI ILSNSAPLINGKQRYAVNGVSYVNADTPLKLADYFNIPGVFSTTSLQTVPSGGAATVATSVIPTSLHDFIEVVFQNNENAMQSWHLDGYDFWVVGFGSGQ WEPSKRNTYNLVDALTRHTTQVYPNSWTSILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWSPVQSLANEYYIPTNALLCGKAVGRSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10016770 [exp]	0	1
AT5G01460			LMBR1-like membrane protein (....		Lus10027794 [exp]	1.0	0.9165
AT5G66920		SKS17	SKU5 similar 17 (.1)		Lus10022465 [exp]	1.4	0.9101
AT3G23050	AUX_IAA	AXR2, IAA7	AUXIN RESISTANT 2, indole-3-ac...		Lus10002724 [exp]	2.4	0.8838
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	3.0	0.8929
AT1G45688			unknown protein		Lus10010232 [exp]	3.2	0.8846
AT1G05170			Galactosyltransferase family p...		Lus10015107 [exp]	3.5	0.8926
AT1G71380		ATCEL3 ,ATGH9B3	ARABIDOPSIS THALIANA GLYCOSYL ...		Lus10025880 [exp]	4.0	0.8306
AT1G53840		ATPME1	pectin methylesterase 1 (.1)		Lus10037457 [exp]	4.2	0.8719
AT2G36710			Pectin lyase-like superfamily ...		Lus10027737 [exp]	4.5	0.8679
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10002000 [exp]	7.0	0.8778

Compare expression of checked genes

Lus10016770 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.