Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10180 838 / 0 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 758 / 0 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) AT1G22150 615 / 0 SULTR1;3 sulfate transporter 1;3 (.1) AT4G08620 612 / 0 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 588 / 0 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT3G51895 563 / 0 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT4G02700 530 / 0 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT1G23090 521 / 4e-178 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G15990 518 / 6e-177 SULTR3;4 sulfate transporter 3;4 (.1) AT5G19600 466 / 9e-157 SULTR3;5 sulfate transporter 3;5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022502 [exp] 1077 / 0 AT5G10180 798 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Lus10029616 [exp] 620 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Lus10041111 [exp] 612 / 0 AT1G22150 1001 / 0.0 sulfate transporter 1;3 (.1) Lus10036437 [exp] 610 / 0 AT1G22150 991 / 0.0 sulfate transporter 1;3 (.1) Lus10006612 [exp] 561 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 550 / 0 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10034603 [exp] 527 / 9e-180 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10025767 [exp] 497 / 3e-168 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 488 / 1e-164 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088700 [exp] 907 / 0 AT5G10180 837 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.005G079000 [exp] 880 / 0 AT5G10180 828 / 0.0 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) Potri.002G092400 [exp] 817 / 0 AT1G77990 826 / 0.0 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1) Potri.005G167300 [exp] 644 / 0 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 617 / 0 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1) Potri.010G082700 [exp] 584 / 0 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 570 / 0 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 553 / 0 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.002G049500 [exp] 549 / 0 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.010G111700 [exp] 526 / 4e-180 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10016806 pacid=23149155 polypeptide=Lus10016806 locus=Lus10016806.g ID=Lus10016806.BGIv1.0 annot-version=v1.0 ATGTCAGCTTCAGAAGCCATAGCAGCTACTGCTGCTGCAACTGACCTCGAGAAAGCTGCAACAGATGGCGTTACTGTTGGACATGGCCATGGCCACAACA ACAACAACAACTCCCAGTGGGTGGTGGATTGTCCGCCACCTCCTGGAATATGGAGTCTGTTTTTGCATTCTCTGAGAGCAACTTTCTCTTTCAACAAGTA CCATAGCCAGCCTGCCTCCCAGAACCTTTTGTTTCTGTTGCAGTCCTTATTTCCTATACTCTCTTGGGCTAGATTCTACAAGCTTAACATGTTCAAAAAA GATGTTATGGCTGGCCTTACCCTTGCCAGTCTCTGCATTCCTCAGGGTATCGGGTACGCGACTCTAGCGAATCTTGAACCTCAATATGGACTCTACACAA GTGTTGTGCCGCCGCTGATATACGCTGTGATGGGGACATCAAGAGAGATAGCAATCGGGCCGGTAGCAGTAGTGTCGTTGCTGCTGTCGTCAATGATTCA GAAGCTGGAGGATCCGGTTTCGAATCCAGTTGGTTTCAGGAACATGGCTCTGACAGCAACTCTATTCGCGGGAGTATTCCAGGCTGCATTTGGTGTGTTG AGGTTGGGTTTCCTTGTGGACTTTCTTTCACATGCTGCTATTGTTGGGTTTATGGCGGGAGCCGCCATCATCATCGGCCTCCAGCAGCTTAAGGGTCTCC TTGGCATTTCTCACTTCACCAATAAGACCGACATCGTCTCTGTCGTCAGAGCCATTTGGACTTCTCTTCATCACTCTTGGAATCCTTACAATTTCATTCT GGGATCTGCCTTCTTGTGCTTCATCCTCATCACCAGATTTGTGGGGAGAAGGTACAAAAAGCTCTTCTGGCTAGCTGCAGTGTCCCCATTAATCTCGGTT GCCATGGCGACGTTAATAGTTTTCCTGACGAAAGCTGATGAGCATGGAGTTAAGATTATAAAGCATATAAAAGGAGGGTTAAACCCAAGCTCTGTCCATC AATTACAGTTCAACGACCCACATATTGCTGAAATCGCCAAAATTGGACTTGTCGTTGCAGTTATTGCTCTCACTGAAGCAATTGCTGTAGGGAGGTCATT CTCAACCATGAAAGGTTACAGCATCGATGGGAACAAGGAAATGGTTGCCATGGGATTCATGAACATTGTTGGTTCCTGCACTTCTTGCTATGTTGCCACT GGTTCATTCTCTCGGAGTGCCGTAAATTTTAGTGCGGGGTGCGAGACAGCAGTGTCGAATATAGTGATGGCAGTGACAGTAATATTGTGCTTGGAGTTGT TCACAAGGATGCTATACTACACTCCAATGGCCATCCTGGCTTCGATTATTCTTTCGGCTCTACCGGGGCTCATCGATTTCCCAGAAGCCATTAAGATTTG GAAGATCGACAAGTTGGACTTCCTGGCCTGCTTAGGAGCCTTCATCGGTGTCCTCTTTGCTTCTGTGGAAAGTGGTCTCCTGGTTGCTGTTGGAATATCG TTTGTGAAGATAATACTGATATCAATCCAGCCTGGAACAGAGATTCTAGGAAGGTTACCAGGAACTGATGTCTACTGTGACATTAATCAATACCCAATGG CCATTCAGACTCCTCCTGTTCTCACTATCCGCCTCAAGTCAGGATTGCTTTGCTTTGCCAATGCCAATTTCGTCAAAGAAAAGGTTATGAGATGGGCTAC TAAAGAAGATGAACACAGTAGCAAGTTAAATGGGAGAAGGGCCATCATCCAACTAGTGGTTCTTGACCTTTCTAATCTGATGAACATTGATGTATCAGGA ATAGCCTCCTTAGAAGAGCTGCACAAGAATCTTATCTCTAAGGGAGTGGAGTTGGCCATCAGCAACCCAAGATGGGAAGTGATACACAAGCTAAAGTTGG CAAACTTTGTGAATAAACTAGGTGGGAAGGTGTTTCTGACTGTTGGAGAAGCCATTGATGCATGCCTCGGTGCTAAAGTAATGGCTGCCATTTAA
AA sequence Show only first row Show all	>Lus10016806 pacid=23149155 polypeptide=Lus10016806 locus=Lus10016806.g ID=Lus10016806.BGIv1.0 annot-version=v1.0 MSASEAIAATAAATDLEKAATDGVTVGHGHGHNNNNNSQWVVDCPPPPGIWSLFLHSLRATFSFNKYHSQPASQNLLFLLQSLFPILSWARFYKLNMFKK DVMAGLTLASLCIPQGIGYATLANLEPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKLEDPVSNPVGFRNMALTATLFAGVFQAAFGVL RLGFLVDFLSHAAIVGFMAGAAIIIGLQQLKGLLGISHFTNKTDIVSVVRAIWTSLHHSWNPYNFILGSAFLCFILITRFVGRRYKKLFWLAAVSPLISV AMATLIVFLTKADEHGVKIIKHIKGGLNPSSVHQLQFNDPHIAEIAKIGLVVAVIALTEAIAVGRSFSTMKGYSIDGNKEMVAMGFMNIVGSCTSCYVAT GSFSRSAVNFSAGCETAVSNIVMAVTVILCLELFTRMLYYTPMAILASIILSALPGLIDFPEAIKIWKIDKLDFLACLGAFIGVLFASVESGLLVAVGIS FVKIILISIQPGTEILGRLPGTDVYCDINQYPMAIQTPPVLTIRLKSGLLCFANANFVKEKVMRWATKEDEHSSKLNGRRAIIQLVVLDLSNLMNIDVSG IASLEELHKNLISKGVELAISNPRWEVIHKLKLANFVNKLGGKVFLTVGEAIDACLGAKVMAAI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10016806 [exp]	0	1
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	1.4	0.9122
AT1G49230			RING/U-box superfamily protein...		Lus10005817 [exp]	1.7	0.8866
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10030400 [exp]	2.0	0.8924
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10018489 [exp]	2.8	0.8683
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10040286 [exp]	7.1	0.8417
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007949 [exp]	7.4	0.8741
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Lus10023407 [exp]	8.5	0.8742
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Lus10001718 [exp]	9.7	0.8399
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	12.5	0.8716
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	14.1	0.8615

Compare expression of checked genes

Lus10016806 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.