Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39830 817 / 0 Cupredoxin superfamily protein (.1) AT5G21105 562 / 0 Plant L-ascorbate oxidase (.1.2.3) AT5G21100 555 / 0 Plant L-ascorbate oxidase (.1) AT5G03260 261 / 8e-80 LAC11 laccase 11 (.1) AT5G05390 258 / 2e-78 LAC12 laccase 12 (.1) AT2G29130 248 / 1e-74 LAC2, ATLAC2 laccase 2 (.1) AT5G48100 246 / 8e-74 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G60020 245 / 2e-73 LAC17, ATLAC17 laccase 17 (.1) AT2G38080 244 / 3e-73 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G58910 243 / 6e-73 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022504 [exp] 1143 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Lus10000871 [exp] 773 / 0 AT4G39830 756 / 0.0 Cupredoxin superfamily protein (.1) Lus10009603 [exp] 769 / 0 AT4G39830 754 / 0.0 Cupredoxin superfamily protein (.1) Lus10026753 [exp] 568 / 0 AT5G21105 787 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10025538 [exp] 568 / 0 AT5G21105 792 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Lus10026512 [exp] 276 / 4e-85 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 262 / 6e-80 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 262 / 8e-80 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10032894 [exp] 259 / 8e-79 AT2G38080 894 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G088222 [exp] 920 / 0 AT4G39830 847 / 0.0 Cupredoxin superfamily protein (.1) Potri.005G079400 [exp] 915 / 0 AT4G39830 828 / 0.0 Cupredoxin superfamily protein (.1) Potri.007G088358 [exp] 909 / 0 AT4G39830 831 / 0.0 Cupredoxin superfamily protein (.1) Potri.010G171700 [exp] 834 / 0 AT4G39830 799 / 0.0 Cupredoxin superfamily protein (.1) Potri.001G454700 [exp] 617 / 0 AT4G39830 619 / 0.0 Cupredoxin superfamily protein (.1) Potri.009G159700 [exp] 576 / 0 AT5G21105 760 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.001G219300 [exp] 566 / 0 AT5G21105 758 / 0.0 Plant L-ascorbate oxidase (.1.2.3) Potri.007G088290 [exp] 399 / 2e-137 AT4G39830 363 / 1e-123 Cupredoxin superfamily protein (.1) Potri.007G023300 [exp] 270 / 5e-83 AT5G03260 889 / 0.0 laccase 11 (.1) Potri.019G088401 [exp] 267 / 9e-82 AT5G09360 592 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10016808 pacid=23149129 polypeptide=Lus10016808 locus=Lus10016808.g ID=Lus10016808.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGCTGCTGCAACCTCGCTTCCACTTGCAGGACTCAAAACTTTGCTCTGTTTTCTCCTACTCGTCTGTTTCCTCACTCATTTTTCTGAAG CTAAAGTCAGACATTACAAATGGGAAGTCAAGTACGAGTACAAGTCCCCTGATTGCTTCAAAAAGCTTGTGATCACCATCAATGGCAAAACTCCAGGACC AACCATCATCGCACGGCAAAATGACACCGTGGTAGTAGATCTGAAGAACGGCCTGGGGACCGAGAACGTCGCAATCCACTGGCATGGAATCCGGCAGATA GGCTCTCCTTGGGCCGACGGCACAGAAGGCGTCACTCAGTGTCCTATTCTCCCCGGGGACACTTTCAGATACAAGTTCGTGGTTGACAGGCCTGGAACAT ACCTGTACCATGCTCATTACGGGATGCAAAGGGAGGCAGGGGTTTACGGATTAATCCGAGTTTCGCTTCCGGATGGAGAGTCTGAGCCTTTCGCTTACGA CTATGACAGAAGTATTGTTTTGAATGATTGGTACCATAGAAGCACTTATGAGCAAGCTTCTGGATTATCAGCCATACCTTTCCGTTGGGTCGGGGAGCCT CAGTCACTGTTGATACACGGAAAGGGAAGATACGAGTGCTCAACTCCAAACCCAGTAGCAGCCGGGGAATGCAACCAAACAAATCCGGAATGCGCTTCTC CCTACACGATGACTGTGGTTCCAGGCAAAACTTACAGGCTGAGAATAGGCAGCCTAACCGCTTTGGCAGCTCTGAGCTTTCAAATACAAGGTCACAACAT GACAGTCGTTGAAGCAGACGGCCACTACGTGGATCCATTCGTTGTACAAACTCTCTACATTTACTCAGGGGAGACCTACTCTGTTCTTGTCAAAACCGAC CAAGACCCTTCCAAGAATTACTGGATCACCACAAACGTCGTTAGCAGAAACCGCACTACGCCTCCTGGAGTTGGAGTTCTCAACTACTACCCTAATCATC CAAGGCGATCTCCACCGACTGACTTCCCAATTGCTCCGCTTTGGAATGATACCACCTCCAGGCTGACTCAGAGTCTGGCCATCAGAGCTAGACCGGGTCA CATCGAAGACCCGCCCCGGAAATCTGATCGGGTCATAGTATTGTTGAATACTCAGAACGAAGTCGGCGGGATCCGCCGCTGGTCCGTCAACAACGTCTCC TTCAACCTGCCGCATACTCCTTACCTTATTGGACTGAAGCACAATCTGCTCCACACCTTCAGTCAGACGCCGCCGCCGGAGGGTTACGATTACAAGAACT ACGACATTCGAATCAGGAACCCTAACCCCAACGCCACGGTCAGCGATGGGATTTACCGTCTGGAGTTGGGTTCGACGGTGGATGTAATTCTGCAGAATGC AAACACGATGGTGGTGGACAACAGCGAGACCCACCCGTGGCATCTCCACGGGCACGATTTCTGGGTGATGGGTTACGGGGAAGGGAAGTTCGACCCGGAA GAGGATCCGAAACGATACAACTTGGTGGATCCGATTATGAAGAACACGGTGCCGGTTCATCCGTACGGGTGGACGGCGCTAAGATTCAAGGCGGATAACC CAGGGGTGTGGCTGTGCCATTGCCACATTGAATCGCATTTCCACATGGGGATGGGCGTTGTATTTGAAGAAGGGATTGACAAAGTTGCAGATTTACCTTC TTCCATTGGCGGTTGCGGGGAAACAAGAGGCCTCTTCAGCACTAAACCATAG
AA sequence Show only first row Show all	>Lus10016808 pacid=23149129 polypeptide=Lus10016808 locus=Lus10016808.g ID=Lus10016808.BGIv1.0 annot-version=v1.0 MAAAAAATSLPLAGLKTLLCFLLLVCFLTHFSEAKVRHYKWEVKYEYKSPDCFKKLVITINGKTPGPTIIARQNDTVVVDLKNGLGTENVAIHWHGIRQI GSPWADGTEGVTQCPILPGDTFRYKFVVDRPGTYLYHAHYGMQREAGVYGLIRVSLPDGESEPFAYDYDRSIVLNDWYHRSTYEQASGLSAIPFRWVGEP QSLLIHGKGRYECSTPNPVAAGECNQTNPECASPYTMTVVPGKTYRLRIGSLTALAALSFQIQGHNMTVVEADGHYVDPFVVQTLYIYSGETYSVLVKTD QDPSKNYWITTNVVSRNRTTPPGVGVLNYYPNHPRRSPPTDFPIAPLWNDTTSRLTQSLAIRARPGHIEDPPRKSDRVIVLLNTQNEVGGIRRWSVNNVS FNLPHTPYLIGLKHNLLHTFSQTPPPEGYDYKNYDIRIRNPNPNATVSDGIYRLELGSTVDVILQNANTMVVDNSETHPWHLHGHDFWVMGYGEGKFDPE EDPKRYNLVDPIMKNTVPVHPYGWTALRFKADNPGVWLCHCHIESHFHMGMGVVFEEGIDKVADLPSSIGGCGETRGLFSTKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39830			Cupredoxin superfamily protein...		Lus10016808 [exp]	0	1
AT1G06475			unknown protein		Lus10004931 [exp]	2.2	0.9567
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10040335 [exp]	4.8	0.9334
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Lus10042317 [exp]	13.9	0.9315
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10040179 [exp]	15.5	0.9364
AT1G27180			disease resistance protein (TI...		Lus10017143 [exp]	16.5	0.9141
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10040698 [exp]	16.8	0.9428
AT4G14746			unknown protein		Lus10039368 [exp]	17.9	0.9385
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	18.2	0.9436
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10023460 [exp]	19.2	0.9479
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10021288 [exp]	19.5	0.9494

Compare expression of checked genes

Lus10016808 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.