Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16770 137 / 5e-39 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT2G47520 92 / 1e-22 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT1G72360 93 / 3e-22 AP2_ERF AtERF73, HRE1 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) AT1G43160 85 / 9e-20 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G50080 85 / 1e-19 AP2_ERF ERF110 ethylene response factor 110 (.1) AT2G33710 83 / 7e-19 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G14230 84 / 2e-18 AP2_ERF RAP2.2 related to AP2 2 (.1.2.3) AT1G53910 84 / 3e-18 AP2_ERF RAP2.12 related to AP2 12 (.1.2.3) AT5G13330 81 / 4e-18 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G61890 81 / 8e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037487 [exp] 297 / 5e-102 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10008214 [exp] 102 / 1e-25 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10003601 [exp] 102 / 2e-25 AT1G72360 144 / 2e-41 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037448 [exp] 97 / 6e-23 AT1G53910 244 / 4e-78 related to AP2 12 (.1.2.3) Lus10013186 [exp] 94 / 6e-22 AT1G53910 254 / 7e-82 related to AP2 12 (.1.2.3) Lus10014054 [exp] 80 / 2e-17 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10022426 [exp] 80 / 5e-17 AT5G61890 170 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10005805 [exp] 80 / 7e-17 AT5G61890 120 / 4e-32 Integrase-type DNA-binding superfamily protein (.1) Lus10006796 [exp] 80 / 8e-17 AT5G61890 122 / 8e-33 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G210900 [exp] 151 / 1e-44 AT3G16770 146 / 5e-43 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.010G006800 [exp] 151 / 2e-44 AT3G16770 130 / 5e-37 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.014G126100 [exp] 114 / 7e-30 AT3G16770 122 / 3e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.002G201600 [exp] 103 / 1e-25 AT3G16770 123 / 2e-33 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Potri.001G163700 [exp] 97 / 4e-23 AT1G53910 223 / 9e-70 related to AP2 12 (.1.2.3) Potri.003G071700 [exp] 96 / 2e-22 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.005G087200 [exp] 90 / 1e-20 AT2G33710 87 / 4e-20 Integrase-type DNA-binding superfamily protein (.1.2) Potri.007G076800 [exp] 86 / 2e-19 AT2G33710 104 / 2e-26 Integrase-type DNA-binding superfamily protein (.1.2) Potri.001G067600 [exp] 84 / 3e-19 AT5G13330 130 / 1e-37 related to AP2 6l (.1) Potri.003G162500 [exp] 84 / 6e-19 AT5G13330 142 / 5e-42 related to AP2 6l (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10016827 pacid=23179057 polypeptide=Lus10016827 locus=Lus10016827.g ID=Lus10016827.BGIv1.0 annot-version=v1.0 ATGTGCGGCGGGGGTGTGATATTTTGTGCGATCATTTCCGGCTTCGTCGACGAGAAGAGCGGCCGGCGTTTGAAGGCCAAGCAGCTCTGGTCCGAGCTCG ACACTCTCTCTGACTTCATCGGCTTCGACTTCCCCGTCGCCGATACTAAACCAAACACTATTCCCAGAGTAATCAGCTCTAAAGACGTTGCTGATCTGGA GAAGAGCAGTGACAGTAAGGTGAGCAAGAAGAAATCTCAACAGAGAGCTCGCAAGAATGTTTACAGAGGAATAAGGCAGCGGCCGTGGGGGAAATGGGCG GCGGAGATCAGAGATCCGTTCAAGGGGACTAGAGTCTGGCTTGGAACCTACAACACGGCGGAGGAAGCCGCTCGCGCTTACGATGAAGCCGCCAAGCGGA TCCGAGGCGATAAGGCCAAGCTCAATTTCCCCTCCGCCGCCGCGGCGAACAAGAAATCTCCTCCTCACTCGGTTGTTGATCAACAAGCTGAATCCGGAGC TTCTTCCTTGTCTCCGCCTCCGGCCAAGAAGCAACGCTGCTTCTCCGTCGATTCTGCACCGGTGGAAACCGCTCCTCCTCCTCCTTCGCCGCTAGCGTGT GGGGGATATGGATTTGAGGAAACCGAGGTGTCCGGCGGCGCGTACGAGCTGAAGAAGCAAATCTCGAGTCTGGAATCTTTCCTCGAGCTGGAACCGGAGG AAAATGCGGCGACACTACCGGTGATCAGCGGCGGCAGTGAGGAAGTGGCGGCGGCGGATCTTTGGATGCTGGATGACCTCGTGAATCAGTACCAGTACCA GCAGTCGGTGTTGCCGAGTGGGATGGCGTACTGA
AA sequence Show only first row Show all	>Lus10016827 pacid=23179057 polypeptide=Lus10016827 locus=Lus10016827.g ID=Lus10016827.BGIv1.0 annot-version=v1.0 MCGGGVIFCAIISGFVDEKSGRRLKAKQLWSELDTLSDFIGFDFPVADTKPNTIPRVISSKDVADLEKSSDSKVSKKKSQQRARKNVYRGIRQRPWGKWA AEIRDPFKGTRVWLGTYNTAEEAARAYDEAAKRIRGDKAKLNFPSAAAANKKSPPHSVVDQQAESGASSLSPPPAKKQRCFSVDSAPVETAPPPPSPLAC GGYGFEETEVSGGAYELKKQISSLESFLELEPEENAATLPVISGGSEEVAAADLWMLDDLVNQYQYQQSVLPSGMAY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Lus10016827 [exp]	0	1
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10029777 [exp]	1.4	0.8359
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	7.3	0.7529
AT3G18360			VQ motif-containing protein (....		Lus10009033 [exp]	10.0	0.7265
AT5G45320			unknown protein		Lus10035675 [exp]	11.5	0.7303
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10006574 [exp]	13.2	0.8097
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	13.2	0.8044
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	17.0	0.7913
AT2G15760			Protein of unknown function (D...		Lus10027912 [exp]	19.0	0.7778
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10012580 [exp]	20.3	0.7785
AT5G64550			loricrin-related (.1)		Lus10011515 [exp]	20.4	0.7543

Compare expression of checked genes

Lus10016827 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.