Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16857 575 / 0 GARP ARR1 response regulator 1 (.1.2) AT4G16110 569 / 0 GARP ARR2 response regulator 2 (.1) AT2G01760 302 / 3e-96 GARP ARR14 response regulator 14 (.1) AT2G25180 296 / 2e-91 GARP ARR12 response regulator 12 (.1) AT1G67710 275 / 6e-84 GARP ARR11 response regulator 11 (.1) AT4G31920 271 / 2e-82 GARP ARR10 response regulator 10 (.1) AT5G58080 253 / 9e-75 GARP ARR18 response regulator 18 (.1) AT5G49240 181 / 7e-52 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 148 / 3e-39 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT5G07210 141 / 4e-35 GARP ARR21 response regulator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037719 [exp] 1265 / 0 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10005340 [exp] 318 / 6e-99 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10041020 [exp] 317 / 2e-98 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10011389 [exp] 301 / 1e-95 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10006446 [exp] 299 / 2e-94 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10019058 [exp] 250 / 2e-74 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 247 / 4e-73 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 202 / 1e-57 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10039345 [exp] 150 / 4e-42 AT3G16857 125 / 6e-34 response regulator 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G213500 [exp] 840 / 0 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 833 / 0 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 370 / 1e-118 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 365 / 7e-117 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.018G111300 [exp] 322 / 6e-100 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 320 / 2e-99 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 307 / 2e-94 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.010G053100 [exp] 299 / 7e-93 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.018G021300 [exp] 300 / 4e-92 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.008G181000 [exp] 288 / 5e-88 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016846 pacid=23179069 polypeptide=Lus10016846 locus=Lus10016846.g ID=Lus10016846.BGIv1.0 annot-version=v1.0 ATGAATCCCCTTAATGGAAAGGGATCCCTCTCCGCTTCTGTTTCCAGAGTCAACTGGAAATCCGGCGAACCAGTCGCGGATCAGTTCCCCGCCGGACTCC GTGTTATGGTCGTTGACGACGATCCCACTTGCCTCATGATTTTGGAGAAGATGCTCAGAACCTGTCTTTATCAAGTGAAGAAATGCAGTAGAGCAGAGGA GGCCTTGTCAATCTTGAGAGAGAACAGAAATGGGTACGATATAGTGATAAGTGATGTACATATGCCGGATATGGATGGGTTTAAGCTGCTGGAGCTTGTT GGTCTGGAAATGGATCTGCCTGTTATCATGATGTCTGCGGATGACTCGAAGAGTGTGGTAATGAAGGGAGTCACTCATGGTGCTTGTGACTATCTGATAA AGCCGGTTCGGATCGAGGCTTTGAAGAACATATGGCAGCATGTTGTTCGTAAGAAGAGGAGTGAGTTGAAGGAAGTGGAGCAATCTGAGAGTGCTGAGGA AGGGGATTCTAGGCAGCCTAAACAGTCTGAGGATGCCGATTATTCTTCCTCGATTAATGAAAGTAACTGGAGAAATTCCAAGAGACGGAAGGATGACGAT GAGGAAGGAGAGGATAGGGATGACACCTCCTCGTTGAAGAAGCCTCGAGTCGTTTGGTCTGTTGAGCTGCATCAACAGTTTGTCGCTGCGGTTAACCAGC TTGGCGTAGACAAGGCCGTGCCGAAGAAGATTCTTGAGTTGATGAACGTACCTGGACTCACTAGAGAAAACGTTGCTAGCCACCTTCAGAAATATCGATT GTATCTGAGAAGGTTAAGTGGTGTTTCTCAGCATCAAAACAATTTGGGGAACTCGTTTATGTCCCAAGACCCAGGTTATGGACCATTGTCCACACTTAAT GGACTAGATCTTCAAACGCTTGCTGCCACTGGCCAGCTCCCAGCTCAAAGTCTTGCAACCCTTCAAGGTGCAGGATTAGGTCGAGCGGTTCCAAAGTCCA GGATCCCAATCCCTGTAGTTGATCAGAGGAGCCTGTTCAGCTTTGAGAACCCGAAATTGGCTTACGGAGATAGCCAACAGCAACAGCAACATCATTTGGG TGGTGGTATGCAGATGAACTTGCTTCATGGAATTCCAACAAATATGGAGCCAAAGCAGCTTGTGAATTTGCACCATTCGGGATCATCTCATGGAAGCATG AACGTGCAAGTTAATTCTCAGAGTGGGTCTCTGCTAATGCAAATGTCTCAACCACAGTCTAGAGCACAGATGCTAAATGATCATACTGTAGCCAACCAAG TTCCTAGGATTCCTTCGACTGTAGGTCAGCCGATCATGTCAAATACCCTTGCTGGCGGTATCATGTCGAGAAATGGTATGGACGAAAGCAACAGACCAAT GGGATATAATAATCCAGCTTCACAGTCTTCATCAATCATGAACTTCCCCTTGCACAGCTCAGCAGAACTGCGAAGTAATAATAGCTACCCTCTTCAGAAT AATCCAGTTGTAGCCAACCTCTCGTCAAAAGGTGCTTTTCAAGAAGACGTGGCCTCAGAAATGAAAGGAGCGCCAGGATTCATGCCTAGCTATGACATTT TTGGTGACTTGAACCAGCAGAAGGCCCATAATTGGGAGCTGCAGAATGTTGGCTTGACCTTTAATGCCTCGCAACAAGGCAATATTGAGGTGGGCTCTTC GGGTGTATCTCGTCAAGGTTTTCCCTCTGGTCAAGGAAGTGGCCAATCCAGGAATTCAGCAGCTATTGTAAGCAGGCCGCCTATGTTCTCTGCTGCTGGC GTGGAACATGTGAACAACACAATAAGTGTCGGCCAGCATATGAATAACCTCTATTCCGAGAATAATCCGGTTAGTATTAAAGTTGAAAGGATTGATACAG GCAATCAGACTACTCTCTTTCACGAGCAATTTGGTCAAGATGATCTCATGACTGCATTACTCAAGCAACAGCAGGGAGGCATTGGACCAGCAGATAATGA GTTTGACTTAGACGGGTATACCTTCGACAATATTCATGTAGCTGCATTTCATCTGTCAATATTGAGAGTTCTGCTGGGTATAAAGGTGGTGGGGGCATAA
AA sequence Show only first row Show all	>Lus10016846 pacid=23179069 polypeptide=Lus10016846 locus=Lus10016846.g ID=Lus10016846.BGIv1.0 annot-version=v1.0 MNPLNGKGSLSASVSRVNWKSGEPVADQFPAGLRVMVVDDDPTCLMILEKMLRTCLYQVKKCSRAEEALSILRENRNGYDIVISDVHMPDMDGFKLLELV GLEMDLPVIMMSADDSKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKKRSELKEVEQSESAEEGDSRQPKQSEDADYSSSINESNWRNSKRRKDDD EEGEDRDDTSSLKKPRVVWSVELHQQFVAAVNQLGVDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLGNSFMSQDPGYGPLSTLN GLDLQTLAATGQLPAQSLATLQGAGLGRAVPKSRIPIPVVDQRSLFSFENPKLAYGDSQQQQQHHLGGGMQMNLLHGIPTNMEPKQLVNLHHSGSSHGSM NVQVNSQSGSLLMQMSQPQSRAQMLNDHTVANQVPRIPSTVGQPIMSNTLAGGIMSRNGMDESNRPMGYNNPASQSSSIMNFPLHSSAELRSNNSYPLQN NPVVANLSSKGAFQEDVASEMKGAPGFMPSYDIFGDLNQQKAHNWELQNVGLTFNASQQGNIEVGSSGVSRQGFPSGQGSGQSRNSAAIVSRPPMFSAAG VEHVNNTISVGQHMNNLYSENNPVSIKVERIDTGNQTTLFHEQFGQDDLMTALLKQQQGGIGPADNEFDLDGYTFDNIHVAAFHLSILRVLLGIKVVGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10016846 [exp]	0	1
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10037719 [exp]	1.0	0.9155
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	6.0	0.7906
AT5G40740			unknown protein		Lus10014617 [exp]	8.5	0.7432
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	11.4	0.7311
AT3G10760	GARP		Homeodomain-like superfamily p...		Lus10038996 [exp]	17.3	0.7135
AT4G10730			Protein kinase superfamily pro...		Lus10001677 [exp]	21.4	0.6728
AT2G37050			Leucine-rich repeat protein ki...		Lus10023166 [exp]	21.8	0.7410
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10001967 [exp]	26.2	0.6941
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10030202 [exp]	26.2	0.7206
AT2G41705			camphor resistance CrcB family...		Lus10028072 [exp]	27.8	0.7292

Compare expression of checked genes

Lus10016846 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.