Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 223 / 7e-71 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 215 / 2e-67 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G62610 206 / 2e-64 MYB PFG2, ATMYB11 PRODUCTION OF FLAVONOL GLYCOSIDES 2, myb domain protein 11 (.1) AT3G23250 191 / 3e-59 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G16720 189 / 2e-58 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 187 / 2e-58 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 188 / 4e-58 MYB AtMYB4 myb domain protein 4 (.1) AT1G35515 186 / 6e-58 MYB MYB8, HOS10 high response to osmotic stress 10 (.1) AT3G61250 187 / 2e-57 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT1G22640 186 / 2e-57 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036453 [exp] 224 / 6e-72 AT5G49330 237 / 1e-76 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Lus10010273 [exp] 215 / 2e-67 AT2G47460 221 / 3e-69 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10036336 [exp] 211 / 5e-66 AT2G47460 225 / 9e-71 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10002435 [exp] 199 / 6e-62 AT2G47460 206 / 9e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10001458 [exp] 199 / 1e-61 AT2G47460 212 / 5e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) Lus10033889 [exp] 195 / 2e-60 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10003557 [exp] 192 / 2e-59 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10000470 [exp] 190 / 2e-58 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10000411 [exp] 188 / 4e-58 AT4G09460 300 / 5e-103 myb domain protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G141000 [exp] 238 / 2e-76 AT5G49330 248 / 7e-80 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G198100 [exp] 216 / 1e-67 AT5G49330 225 / 2e-70 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G122700 [exp] 205 / 3e-63 AT5G49330 214 / 4e-66 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.019G018200 [exp] 191 / 5e-60 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.005G224100 [exp] 192 / 9e-60 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.003G144200 [exp] 192 / 1e-59 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.014G100800 [exp] 191 / 2e-59 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.001G086700 [exp] 191 / 3e-59 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.002G173900 [exp] 190 / 9e-59 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.003G144300 [exp] 188 / 2e-58 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10016855 pacid=23179077 polypeptide=Lus10016855 locus=Lus10016855.g ID=Lus10016855.BGIv1.0 annot-version=v1.0 ATGGGAAGAGCTCCGTGCTGCGAGAAAGTCGGCCTGAAGAAGGGGAGATGGACGGCGGAGGAAGACCAGATCTTGACGGCGTACATTCTCCAGAACGGCG AAGGCAAATGGCGCTCTCTCCCCAAGGACGCAGGTCTGTTGAGGTGTGGGAAGAGTTGCAGGCTGAGGTGGATTAATTACCTAAGGGCTGACTTGAAGCG TGGGAATATTACCAAGGATGAGGAAGAGACTATTGTTAAGCTCCACAACGCTCTTGGCAATAGGTGGTCGTTGATAGCGGCCCAATTACCCGGAAGAACC GACAATGAGATAAAAAATTACTGGAACTCTCATCTCAGTCGCAAAATTTACTGTTTCCCCAGCCGCCGTTCACCCGCCGCCGGCCACTCGTCCGCCTCTT CCGCCGCCTCCTCCTCCTCCTCCGCCAATTCAACCACCACCTCCATTGACATCATCGCTCCTCCCCCCGCCGCCGCGAGTAGAGGCAAAAGCCGGAAATC AAGTGCCAATAAGAAAAAACAACCCGCCGAAAAGTCTAAAGACGGGAAGTCGGAAGCTTCACTGAGCGGAATTAGTGCTAATTCCGCCGAACAGAACAGC GGAGATGATGGGGCCGCCCCCACCGCCGCTGGCGGGGGAGGTGAATTAATGTCGTTGGATGGGGTAGGGATGAAAGTTGTGGGAGACGAGGATGTTCTGG AACCATACGAATGGCTGGACAGCGAGATAAACCGTCTTAAGAGCTCACTGATTCCCACCGAGGTAGAAGATTCGGCAGTGAAGCGTAATGATGATATGGT GGTTGAGAATAAAGGCGGTGAAAGCAATGGTAATAAGTGTGGTGGTGGAGGGGAAGAAGAGTGGCTGGATTGGGACCAGATTGACAACATCCAATGGGAT CATGAAGTAGACTACAACAACAGTTTCCCATGGCTCTAG
AA sequence Show only first row Show all	>Lus10016855 pacid=23179077 polypeptide=Lus10016855 locus=Lus10016855.g ID=Lus10016855.BGIv1.0 annot-version=v1.0 MGRAPCCEKVGLKKGRWTAEEDQILTAYILQNGEGKWRSLPKDAGLLRCGKSCRLRWINYLRADLKRGNITKDEEETIVKLHNALGNRWSLIAAQLPGRT DNEIKNYWNSHLSRKIYCFPSRRSPAAGHSSASSAASSSSSANSTTTSIDIIAPPPAAASRGKSRKSSANKKKQPAEKSKDGKSEASLSGISANSAEQNS GDDGAAPTAAGGGGELMSLDGVGMKVVGDEDVLEPYEWLDSEINRLKSSLIPTEVEDSAVKRNDDMVVENKGGESNGNKCGGGGEEEWLDWDQIDNIQWD HEVDYNNSFPWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	2.0	0.9150
AT2G36885			unknown protein		Lus10013829 [exp]	2.4	0.8781
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	2.8	0.9034
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	5.5	0.8593
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041507 [exp]	5.9	0.8613
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10012586 [exp]	6.6	0.8622
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040525 [exp]	7.5	0.8521
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	9.8	0.8139
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	12.0	0.8150
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10004251 [exp]	12.0	0.7787

Compare expression of checked genes

Lus10016855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.