Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 163 / 1e-44 GRAS RGL2 RGA-like 2 (.1) AT1G66350 154 / 3e-41 GRAS RGL1 RGA-like 1 (.1) AT5G17490 149 / 1e-39 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 147 / 1e-38 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 145 / 7e-38 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G41920 117 / 1e-28 GRAS GRAS family transcription factor (.1) AT1G55580 115 / 8e-28 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT2G29065 114 / 3e-27 GRAS family transcription factor (.1) AT5G59450 113 / 8e-27 GRAS SCL11 GRAS family transcription factor (.1) AT3G54220 109 / 2e-25 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037758 [exp] 278 / 2e-87 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 275 / 2e-86 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 270 / 5e-84 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10018099 [exp] 267 / 6e-84 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10001451 [exp] 258 / 3e-81 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10037753 [exp] 254 / 4e-79 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10041128 [exp] 249 / 3e-77 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10037756 [exp] 246 / 1e-76 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10002424 [exp] 246 / 5e-75 AT5G17490 161 / 8e-43 RGA-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143200 [exp] 427 / 2e-147 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.010G143700 [exp] 342 / 2e-112 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.002G195600 [exp] 314 / 1e-101 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143500 [exp] 313 / 2e-101 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 305 / 8e-99 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143600 [exp] 306 / 9e-99 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.014G120000 [exp] 235 / 2e-71 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.008G131700 [exp] 151 / 4e-40 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 142 / 1e-36 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 142 / 1e-36 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016886 pacid=23179076 polypeptide=Lus10016886 locus=Lus10016886.g ID=Lus10016886.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGAAACCGGAGATTATCAACCGGAGAAACCATCCAAGTCGCTAAAGCTAGATTCCTTCAGCTTTCTTCACAACACCGTGTCGATGTATCTA AGCTTAAACATTTCTTCGACGCTTCTCAATTCAACCTCTCCGGCGAGGAGATCAAAGACGTCGAGCTCCTCCTTCTCCTTCTCGCTGCATCTCATAAACT CGCTTCCAAACAGCTCCAACAGTCGATCAAATTCCTTAGTTGGTGTCAATTCCTCTCCTCCGCTACAGGAACCTCCGTTCAGCGGCTCGTTCACTACTTC ACCAAATCTCTTCAGGAAAAAATATTTGGATCCGAAATAGGATGGGAAGAATTCGGAGAACAACGATCGAGTACTGATTTGGCTCCGACGGAAACTTCGT CGTGTTCGAATCCAGCTCTGATCGCTTGTTCGTTACAGCTCCCGCACGTCCAGGTCACTCAATTCGCCGGAATCCAGACCGTCGCCGAGAACGTCGCGAC AGCGAAGCGAGTCCGGCTGATCGATCTCGCGATCCGGAGCGGGGGACACTGTACTGTCCTGATGCAGGCGCTCGCCAATCGGCAATCGCCGATTGAGATG CTGACGGTGACAGCTGTCGTCACGGGGAAATTGAAATCTTCGGAACAGAGGATAGAAGAGACTGGGAAACGGTTAGCGAGTTTTGCGGAAACGCTAAACA TCCCGCTACGGTTCAATTACATTATTGTCCCTACAGTTAGGGACTTAACGGAGGAAATGTTCGACATCGGTGACGGAGAAACGGTCGCCGTCTACGCGAG GAACATCCTGAGGAATGTGAGAGCACAGGCGGGGAGCTTGGAGTCGTTAATCAGGGTGTTGAGGAATTTGAATCCTTGCGCGATTGTGGTGACGGAACTG GAGGCAAACCACGACTCGACGGAGATAGTGGAACGATTCGAGGGGGCGATGTCGACGTACGGAGCGGTGTTCGATTGTTTGGAGGATTGTTTGGGTCGGG CGGACGGGAACCGGAGGGTGATGGAGTCGACGGTGGGGCAGGAGATCCGGGATGTGTTGACGGGGGCGGGGGAGGAAGAGAGGGTTTTCCGGCACATGAG GGTTGAGGAGTGGAGAGATTACTTCGGAAGAGTTGGAATGGTGGAGATGGAGATGAGCAGGTCGTCGTTTTATCAGGCGGCGCTGCTGCTGAGGAATTTT AATGCAGGGGAATCGTGTACGGTGGATCGGAACGGGAAGTGTTTGGTGACGGGATGGAAAGGGACGCCGTTGCATTCGGTGTCGGCGTGGAAGTTTTATC GGCAAGTTCCGAAACGGCCGAGGGGTAAGAAATACACGGCGTGA
AA sequence Show only first row Show all	>Lus10016886 pacid=23179076 polypeptide=Lus10016886 locus=Lus10016886.g ID=Lus10016886.BGIv1.0 annot-version=v1.0 MAAGNRRLSTGETIQVAKARFLQLSSQHRVDVSKLKHFFDASQFNLSGEEIKDVELLLLLLAASHKLASKQLQQSIKFLSWCQFLSSATGTSVQRLVHYF TKSLQEKIFGSEIGWEEFGEQRSSTDLAPTETSSCSNPALIACSLQLPHVQVTQFAGIQTVAENVATAKRVRLIDLAIRSGGHCTVLMQALANRQSPIEM LTVTAVVTGKLKSSEQRIEETGKRLASFAETLNIPLRFNYIIVPTVRDLTEEMFDIGDGETVAVYARNILRNVRAQAGSLESLIRVLRNLNPCAIVVTEL EANHDSTEIVERFEGAMSTYGAVFDCLEDCLGRADGNRRVMESTVGQEIRDVLTGAGEEERVFRHMRVEEWRDYFGRVGMVEMEMSRSSFYQAALLLRNF NAGESCTVDRNGKCLVTGWKGTPLHSVSAWKFYRQVPKRPRGKKYTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016886 [exp]	0	1
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	87.6	0.8068
AT5G46060			Protein of unknown function, D...		Lus10013944 [exp]	88.7	0.8007
					Lus10012330 [exp]	133.6	0.7789
AT3G14470			NB-ARC domain-containing disea...		Lus10029704 [exp]	160.6	0.7633
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030169 [exp]	204.5	0.7714
AT1G55200			Protein kinase protein with ad...		Lus10008566 [exp]	218.5	0.7656
AT1G56140			Leucine-rich repeat transmembr...		Lus10020688 [exp]	242.2	0.7619

Compare expression of checked genes

Lus10016886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.