Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037752 [exp] 378 / 1e-133 AT2G29060 46 / 1e-05 GRAS family transcription factor (.1) Lus10024252 [exp] 84 / 5e-18 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10037753 [exp] 83 / 7e-18 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10023621 [exp] 82 / 2e-17 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10041128 [exp] 82 / 2e-17 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10036457 [exp] 79 / 3e-17 AT3G03450 60 / 4e-10 RGA-like 2 (.1) Lus10016889 [exp] 79 / 2e-16 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10037758 [exp] 78 / 4e-16 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016890 [exp] 77 / 8e-16 AT3G03450 152 / 5e-40 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 80 / 6e-17 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143500 [exp] 76 / 2e-15 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 74 / 1e-14 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.002G195600 [exp] 71 / 1e-13 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 69 / 5e-13 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.014G120000 [exp] 62 / 8e-11 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 60 / 4e-10 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.012G020200 [exp] 47 / 8e-06 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.015G008300 [exp] 44 / 7e-05 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.001G241900 [exp] 41 / 0.0008 AT1G07530 497 / 4e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016887 pacid=23179087 polypeptide=Lus10016887 locus=Lus10016887.g ID=Lus10016887.BGIv1.0 annot-version=v1.0 ATGGGCTATTCTCATCATCATCTTCAACATGACGAAAGATTCTTCCTAGATTCCGACATGCATACATTCGACCACGTCGAAGTCGATGATGATGATCAAT GGTCACTCCAACACGGCCGAAGCTTAGAGCTTGATGATAATACCGATGACGATGATGATGATTCTGATGAATGGCCAGTATTGGACGTCTCGAGTACTCA TCCTCATCTCGAAACAGAGGAGTCGTCGACGCTGTCCACGGAGGACGTGATACGACTCGCGGGGATGAGGATGATTCACATGTCGTCAAACAATCACGGA TTATCCGACCGTGACGTCAGGAACGTGGCGCTAACCGGATACCTCCTCTCTTCCGCTGACAACGTTGCGAAAGGACGGTTCGACCAGGCTTTGGGTCTAC TCCGTCTGTGCGACAGCCTGTCGACCAGCCAGGGTAACCCGGTCGAACGAGTGGTTCATTATTTTTCGAAAGCACTCCGAGTCAAGATATCCAAAGAAAC CGGAACGGTTGATCAATATCTGATCATCAGTGATAATCACAATATACTTCGTCCTGATGATGACATGTCATTGGTGCATTCCCGCCGAATAAGTCAGCAC ATAGCTGCCACGCAAGCGAAGGTGGAAGTGAATTGGGTCAGCTCGCCACATTTCGCGTCACGGTTCGTGGAAATGCTGTTTCATTATGGAGCGTTGTTTG ATGGTTTGGACACGTGTACGGGGGATAATGAGCGGGGAAGGGCGGTGGTGGAGTCGACGTATCTGAGTAAGCTGATCATGAAGGATGTGGTAGAATAG
AA sequence Show only first row Show all	>Lus10016887 pacid=23179087 polypeptide=Lus10016887 locus=Lus10016887.g ID=Lus10016887.BGIv1.0 annot-version=v1.0 MGYSHHHLQHDERFFLDSDMHTFDHVEVDDDDQWSLQHGRSLELDDNTDDDDDDSDEWPVLDVSSTHPHLETEESSTLSTEDVIRLAGMRMIHMSSNNHG LSDRDVRNVALTGYLLSSADNVAKGRFDQALGLLRLCDSLSTSQGNPVERVVHYFSKALRVKISKETGTVDQYLIISDNHNILRPDDDMSLVHSRRISQH IAATQAKVEVNWVSSPHFASRFVEMLFHYGALFDGLDTCTGDNERGRAVVESTYLSKLIMKDVVE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10016887 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10000558 [exp]	3.5	1.0000
AT3G51590		LTP12	lipid transfer protein 12 (.1)		Lus10004067 [exp]	4.9	1.0000
AT1G17930			Aminotransferase-like, plant m...		Lus10005482 [exp]	6.0	1.0000
					Lus10011636 [exp]	6.9	1.0000
AT3G16970			Plant self-incompatibility pro...		Lus10011753 [exp]	7.7	1.0000
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10011892 [exp]	8.5	1.0000
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10022473 [exp]	9.2	1.0000
AT4G10950			SGNH hydrolase-type esterase s...		Lus10023070 [exp]	9.8	1.0000
AT1G34575			FAD-binding Berberine family p...		Lus10023373 [exp]	10.4	1.0000
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	10.4	1.0000

Compare expression of checked genes

Lus10016887 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.