Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 126 / 3e-32 GRAS RGL1 RGA-like 1 (.1) AT3G03450 124 / 1e-31 GRAS RGL2 RGA-like 2 (.1) AT1G14920 121 / 2e-30 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 121 / 3e-30 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G55580 114 / 2e-28 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT5G17490 109 / 2e-26 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G37650 109 / 6e-26 GRAS SCL9 GRAS family transcription factor (.1) AT3G46600 105 / 4e-25 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 104 / 2e-24 GRAS SCL11 GRAS family transcription factor (.1) AT1G07530 103 / 4e-24 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037753 [exp] 531 / 0 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10041128 [exp] 380 / 1e-129 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10036459 [exp] 247 / 2e-77 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10018101 [exp] 228 / 5e-71 AT2G01570 162 / 4e-44 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 226 / 6e-70 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10022414 [exp] 224 / 3e-69 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10037754 [exp] 218 / 8e-69 AT1G66350 156 / 2e-43 RGA-like 1 (.1) Lus10016889 [exp] 223 / 2e-68 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10018099 [exp] 221 / 3e-67 AT2G01570 171 / 1e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 246 / 9e-77 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 242 / 7e-75 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 234 / 2e-72 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 211 / 3e-64 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 203 / 3e-60 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143200 [exp] 189 / 6e-56 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 174 / 2e-49 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.017G125200 [exp] 129 / 7e-33 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 128 / 9e-33 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 124 / 3e-31 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016888 pacid=23179082 polypeptide=Lus10016888 locus=Lus10016888.g ID=Lus10016888.BGIv1.0 annot-version=v1.0 ATGGCCCACGTAGAGTTAGTGTGGCGCTTATCAAAGCCCACGGCATTAGTTAGTTGTGGCGCTTACCAAGGCCCACCGCGTAACAGAAGTGCAATAAGCA CAATCGCCAGCATACGGGCCCTAACTAGTTCCCCAAACAACTGTAACACTCTGCCACAGCCCACAGTGACAGAGCTGACCGAATCAGCGGTGAAGGCGAA GAGGATTCACGGCATCGATCTTCAGATTAAGTCAGGCCTTCATTGGATCGGGTTGATGCAAGCTGTCGAATCTCGAACCGATTATCCGATCGAGTTTTTC AGGATTACTGCCCTCTGTGCCGGTCCGGTTGAGCAGGTGCGGACGACAGGGGACCGGTTGAGTGATTTCGCTCGCTCGAAGGGGATTAACTTTTGTTTCA AGATTGTGATGGTGGGGGATGCCTTGCACTTGACCGATTCGATGCTCGAAATGGACGAGAAGGAAACGGTGATGGTTTACTCGGAGCACTCGTTCGCAAC CATGATCAGCCAACCGGACCGAATGGAAGCGTTCATGAGAGTGATGAGGAGCTTGAACCTGAGAATCGTCGTTGTGACCGAAAAGGAAGGGAAAAACAAC TCGCCCCATTTCTCGACGCGGTTCGTGGAGACGTTGTTCAATTACGGTGCCGTTTTCGACAGCGTGGACACTTGCGTTGGGGATGGAAACGACGACAACG TGGAATGCAGGATGTATCTAGAGTCGGGAATCATGGGGAGGATGATAAGCAACATCGTGGCGTGCGAGGGAGAGGAGCGCGTGATTCGGGGGGTATCGGC GGATGTGTGGCGGGCGTTTTTTCGAAGATTTGAGATGGTGGAGAAGAAGTTAAGTCCGGTTGTGTGGGAACAGGTGAGGTTTGTGCAAGAGACGTTCCAA AACGGAGAATTTTGTACGGTGGGAAGAGACGGTAAGGTGATGGTGATTGGATGGAAAGGGATGCCTATGTTCTCGGTCTCGACTTGGAAATTCTTTCGGC CCGCTAAGCTTGTAAGTGGGAGGAAACACTTGAGGGTTGAGTTCGAGTAG
AA sequence Show only first row Show all	>Lus10016888 pacid=23179082 polypeptide=Lus10016888 locus=Lus10016888.g ID=Lus10016888.BGIv1.0 annot-version=v1.0 MAHVELVWRLSKPTALVSCGAYQGPPRNRSAISTIASIRALTSSPNNCNTLPQPTVTELTESAVKAKRIHGIDLQIKSGLHWIGLMQAVESRTDYPIEFF RITALCAGPVEQVRTTGDRLSDFARSKGINFCFKIVMVGDALHLTDSMLEMDEKETVMVYSEHSFATMISQPDRMEAFMRVMRSLNLRIVVVTEKEGKNN SPHFSTRFVETLFNYGAVFDSVDTCVGDGNDDNVECRMYLESGIMGRMISNIVACEGEERVIRGVSADVWRAFFRRFEMVEKKLSPVVWEQVRFVQETFQ NGEFCTVGRDGKVMVIGWKGMPMFSVSTWKFFRPAKLVSGRKHLRVEFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016888 [exp]	0	1
					Lus10005514 [exp]	3.0	1.0000
AT1G28300	B3	LEC2	LEAFY COTYLEDON 2, AP2/B3-like...		Lus10014005 [exp]	3.5	1.0000
AT3G02960			Heavy metal transport/detoxifi...		Lus10015762 [exp]	4.2	1.0000
AT5G05070			DHHC-type zinc finger family p...		Lus10027274 [exp]	4.9	1.0000
AT3G60730			Plant invertase/pectin methyle...		Lus10015877 [exp]	6.0	1.0000
AT5G27260			unknown protein		Lus10007175 [exp]	6.7	1.0000
AT1G61320			FBD / Leucine Rich Repeat doma...		Lus10010664 [exp]	7.5	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10017015 [exp]	8.4	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10030964 [exp]	8.8	1.0000
AT5G27260			unknown protein		Lus10032874 [exp]	9.2	1.0000

Compare expression of checked genes

Lus10016888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.