Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 152 / 3e-40 GRAS RGL1 RGA-like 1 (.1) AT5G17490 150 / 2e-39 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G14920 147 / 3e-38 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 145 / 1e-37 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G03450 144 / 5e-37 GRAS RGL2 RGA-like 2 (.1) AT1G55580 125 / 6e-31 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT3G50650 125 / 1e-30 GRAS SCL7 GRAS family transcription factor (.1) AT4G17230 120 / 3e-29 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 117 / 5e-28 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 112 / 6e-27 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037754 [exp] 558 / 0 AT1G66350 156 / 2e-43 RGA-like 1 (.1) Lus10023621 [exp] 460 / 6e-158 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10024252 [exp] 457 / 1e-156 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10037753 [exp] 309 / 2e-99 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10041128 [exp] 295 / 8e-94 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10037758 [exp] 267 / 1e-82 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 266 / 3e-82 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10001451 [exp] 258 / 1e-80 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10016893 [exp] 256 / 5e-78 AT3G03450 175 / 1e-47 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 316 / 1e-101 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 310 / 5e-99 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 306 / 4e-98 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 285 / 1e-90 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 283 / 1e-88 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 239 / 2e-72 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 223 / 6e-67 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.008G131700 [exp] 149 / 1e-38 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 148 / 3e-38 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 147 / 4e-38 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016889 pacid=23179111 polypeptide=Lus10016889 locus=Lus10016889.g ID=Lus10016889.BGIv1.0 annot-version=v1.0 ATGAACACTTCTCAAAATGGGTGGTCTCCCTTATCCAACCTCGATAACTTTGACGATCAATGGCTCCACATGTTCTCTCCGTTGTGCCACTTGGGTTCAG ATGAAATCGAGGAATTGGGTCGGATCCTAGATGAAGCGGGACCCGACGAAGGTACTTCAAACCCTAGTGACGAACCGGTGGTCGAAGAACCACCACCAAC GTCGTCCCAACAACAACTACCGTCTCCACCATTGTCCTTTGACCTTCTCCATACACACGGTGGGAAGTCAAATTTTTCGTCCGGGGAGAAGGAAGGGCCG ACTACGGTGGATCAAGTGTTGCGAATTGCGGGGCAACGGGTTGTCGAATTCTCGAATGGGAGAGCCGGAGCTCCATCGATGTTGCACCTTCCTATGGATC CATCACTTTCGCATTTGTCGGAGGAAGATGTTAAGAACGTGGAGCTGGTTGAGTATCTTTTGGCTGCTGCAGAGAGAGTAGGCGACCAGCAGTTTGATCA TGCGGCTTCCTTGCTCAATTTGTGCGGTTCCTTGGCTTCCAAGTCTGGCAACGCTGTTCAACGGTTAGGGTATTATCTTGCCGAAGCCCTTCGGGATAGG ATTTCTCGCGAAACAGCCGCCGTTCAAGCCATACTAGAAAACGTCACATCATCCAACAAGATCCACGTCATTGATCTCAAAATCGGCAGCGGCCAACAAT GGGTCGCTCTCATGCAAGGCTTATTGACATCTCGGTCCGACGAGGACCGAGCTGGTGGGGCCTCGGTCGACCTACTTCGAATCACCGCAGTGGGGATCAC GGCCCTCGACCGGTCTCAGGTCGAAGAGACCGGGGACCGGCTGGCGAGCTTTGCGGGCAGCATCAACATTCCGTTCCGTTTCGAGGTGGTCGTGGTCACG GACGAAAAGGAGGCGTCCGATTTCCGACCGGACCGGTTCGGACTCGAACCGGAGGAGGAATCGGTGGTCGTGTACTCGGAAGGCGTGTTGAAAACCCTAA TCGGGCAGCCACGCCGGATCGAGCAAGTGATGTTGACTCTGAAGCGGATGAACCCGCGAATCATGGTCGTGGTTGAGGTGGAGGCGAACCTTAACTCCCC GAATTTCGGAAGGCGGTTTGTGGAGACCATGTTTCACTACGGGGCGATTTTCGAGAATTTGGAGAGCACCATGGGGCGGGACAACATGTTTCGTGCGGGG ATCGAGTCAGGGTTGCTTGGGCATCAAGTTAGTAATATATTGGCTAGCGACGGAGAAGAGAGGCACGTGAGAGGGGTGAAGATTGGGGTATGGAGGAAGT TCTTTGCTAGGTTTGGGATGGTGGAGGTTGAACCGAGTGCGATGACATTGCACCAAGCTAAGTGGTTCCTTTATAGGTTTGTGAAGAATCAGAGTTATAC TGTTGAGATGGATGGCAAGAGTTTGATTTTAGGGTTTAAAGGTATCCCCGTGCGTTGTGTGTCTACTTGGAAGTTTGTTCGAATCGGTAGGCTGGTTCGA GACAATGAAGAGCTTAGAGTTGAGTTCTACTGA
AA sequence Show only first row Show all	>Lus10016889 pacid=23179111 polypeptide=Lus10016889 locus=Lus10016889.g ID=Lus10016889.BGIv1.0 annot-version=v1.0 MNTSQNGWSPLSNLDNFDDQWLHMFSPLCHLGSDEIEELGRILDEAGPDEGTSNPSDEPVVEEPPPTSSQQQLPSPPLSFDLLHTHGGKSNFSSGEKEGP TTVDQVLRIAGQRVVEFSNGRAGAPSMLHLPMDPSLSHLSEEDVKNVELVEYLLAAAERVGDQQFDHAASLLNLCGSLASKSGNAVQRLGYYLAEALRDR ISRETAAVQAILENVTSSNKIHVIDLKIGSGQQWVALMQGLLTSRSDEDRAGGASVDLLRITAVGITALDRSQVEETGDRLASFAGSINIPFRFEVVVVT DEKEASDFRPDRFGLEPEEESVVVYSEGVLKTLIGQPRRIEQVMLTLKRMNPRIMVVVEVEANLNSPNFGRRFVETMFHYGAIFENLESTMGRDNMFRAG IESGLLGHQVSNILASDGEERHVRGVKIGVWRKFFARFGMVEVEPSAMTLHQAKWFLYRFVKNQSYTVEMDGKSLILGFKGIPVRCVSTWKFVRIGRLVR DNEELRVEFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10016889 [exp]	0	1

Compare expression of checked genes

Lus10016889 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.