Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 151 / 1e-39 GRAS RGL2 RGA-like 2 (.1) AT2G01570 150 / 4e-39 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 141 / 4e-36 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 136 / 2e-34 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 131 / 8e-33 GRAS RGL1 RGA-like 1 (.1) AT5G41920 121 / 6e-30 GRAS GRAS family transcription factor (.1) AT3G54220 114 / 1e-26 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT4G17230 110 / 1e-25 GRAS SCL13 SCARECROW-like 13 (.1) AT5G48150 108 / 3e-25 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G55580 100 / 2e-22 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037755 [exp] 318 / 3e-107 AT1G66350 81 / 5e-18 RGA-like 1 (.1) Lus10022414 [exp] 300 / 7e-96 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 290 / 3e-92 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10023621 [exp] 283 / 6e-89 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10036459 [exp] 282 / 2e-88 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10024252 [exp] 279 / 3e-87 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10041128 [exp] 276 / 1e-86 AT1G66350 162 / 6e-44 RGA-like 1 (.1) Lus10037753 [exp] 273 / 2e-85 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10037758 [exp] 273 / 8e-85 AT3G03450 186 / 6e-52 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 319 / 1e-102 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 309 / 2e-98 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 301 / 1e-95 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.002G195600 [exp] 283 / 1e-88 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 269 / 5e-84 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.014G120000 [exp] 229 / 2e-68 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 221 / 2e-66 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.008G131700 [exp] 152 / 2e-39 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 146 / 1e-37 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 145 / 3e-37 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016890 pacid=23179117 polypeptide=Lus10016890 locus=Lus10016890.g ID=Lus10016890.BGIv1.0 annot-version=v1.0 ATGGATATTTGGCAACAGATTTTAGAGCTCAATCATGTCGAATTTCAATCCGACGACGATGAGGAAATTGACTGTACCGAAGACGACAACGAAGAAGATG ACGAGGAAGAGCAAACGGAGGAGCCAATTGAGTTTGCCGGTGCCGCCGCCTCTTTCGGCCTCCTCAGAGACCGCTACAACAAAACGACGTCATCTTCTGC CTCGGAGACCACCAACCAAGTTCTATCCACGAGCGAGATCATAAAGCTGGCCGGGATGAGAATCATCGAGTCGTTGACTTCGTCAAGTCAACACGGCGAC GTTTTATCGATCCTCGACAACCCATTCATGATCGAATCTTCTTCTTCATCCAGTCAAAACGACACCGAAGGACTCAGCCAGGAGGAGGTGAAGAACGTGG AGCTGATAGAAAACCTGCTATCATCCGCCGATAATCTCGGGAGAGGAAATTACAAACGAGCCCTCGGCCTCCTCGATCTCTGCGACTGCTCGGCTTCCCA GACTGGACCCTGCCCCGTCCAGCGGGCGGCGTACTACTTCTCCAGAGCGCTTCGTCAGAGGATAGCTAATACGACGCCGTTCGAAGCCACGCTAACTTGT GGGAACACCGCTAAAAGCGCGGTGGAAATCGTGCACACCAGAGTCCCCTTCTCGATGGCGTCGCAATTGGCAGCTGTCCAAGCAGTCCTCGAAAACGTCG TCGGAGAGAAGCGGATCCACGTGGTGGATCTGAAGATCCGGACGGGGCTGTTTATCATCGCCTTGATGCAAGCTCTGTCGTCGAGTCGGGGGCTCAAGAA TAAGCCTTCGCTTGAGCTCCTGAAGGTCACGGCCGTGGCAAGTGACTCCTCGGAGGAGCGATCTATGGCGGAGACTGGACGCAGGCTGTCCAATTTCGCC CACGGAATGCGCATACCGTTCTTGTTTAAAGTCGCTAAGGAGGACAAATCGACTGGGCCTCACAAGTCCCAAGTAGAGCAGGAGCCGAAGGAAGCAACGG TGGTGTATTCAGAATACGCTATCAGCTTACTAATCGCGAAGCCGAGCCGCCTGGAAGCGATGATGAAGTTCGTCAGAAGCCTCCACCCGCGGGTGATGGT GGTGATCGAGACGGAGGCGAACCACAACTCGAAAGACTTCGGGCACCGCTTCGTGGAGGCGCTGTTTACGTCCGCGGCGCGGTTCGACTGCGTGGCGGAG TGTATGGACGTCGTCGGCGGTTGTACGGCGGAGGCGAGGACGGCGGTGGAGGCGGTTTATTTGAACGAGAGGATAAGGAACGTGGTGGTGGCGGAGGGAG ACGACCGGGTGATTCGGGACGTGAGGATTGGGGTGTGGAGGAAGTATTTCGCGAGGTGTAGGATGCTGGAGATTCAGTTGAGTAAGTTGGCGCTGAACCA CGCGAAGCTTGTGGTGAGCAGGTTCCCCTGTGCGGCGTCGTGTTTGGTTAGGGTTGATAATAGGAAGAGTTTGTTACTGGGCTGGAAGGATACGCCGTTG GTGTTTGTTTCGGCCTGGAAGTTTGTAGGGCCCAATAGGAAGCGCAGAATCGTAGTGGACGACACGACGTCGTCTCCGGTTGCCTAA
AA sequence Show only first row Show all	>Lus10016890 pacid=23179117 polypeptide=Lus10016890 locus=Lus10016890.g ID=Lus10016890.BGIv1.0 annot-version=v1.0 MDIWQQILELNHVEFQSDDDEEIDCTEDDNEEDDEEEQTEEPIEFAGAAASFGLLRDRYNKTTSSSASETTNQVLSTSEIIKLAGMRIIESLTSSSQHGD VLSILDNPFMIESSSSSSQNDTEGLSQEEVKNVELIENLLSSADNLGRGNYKRALGLLDLCDCSASQTGPCPVQRAAYYFSRALRQRIANTTPFEATLTC GNTAKSAVEIVHTRVPFSMASQLAAVQAVLENVVGEKRIHVVDLKIRTGLFIIALMQALSSSRGLKNKPSLELLKVTAVASDSSEERSMAETGRRLSNFA HGMRIPFLFKVAKEDKSTGPHKSQVEQEPKEATVVYSEYAISLLIAKPSRLEAMMKFVRSLHPRVMVVIETEANHNSKDFGHRFVEALFTSAARFDCVAE CMDVVGGCTAEARTAVEAVYLNERIRNVVVAEGDDRVIRDVRIGVWRKYFARCRMLEIQLSKLALNHAKLVVSRFPCAASCLVRVDNRKSLLLGWKDTPL VFVSAWKFVGPNRKRRIVVDDTTSSPVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016890 [exp]	0	1
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10039711 [exp]	2.4	0.8929
AT1G33670			Leucine-rich repeat (LRR) fami...		Lus10041065 [exp]	4.5	0.8920
AT3G25810			Terpenoid cyclases/Protein pre...		Lus10039712 [exp]	7.5	0.8706
AT1G26680	B3	REM17	transcriptional factor B3 fami...		Lus10026234 [exp]	14.8	0.8403
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	17.2	0.8682
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10013218 [exp]	20.7	0.8862
AT1G03270			CBS domain-containing protein ...		Lus10012375 [exp]	22.5	0.8659
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	23.4	0.8800
AT3G06240			F-box family protein (.1)		Lus10001105 [exp]	31.8	0.8799
AT4G36740	HD	HB-5, ATHB40	homeobox protein 40 (.1)		Lus10041719 [exp]	33.7	0.8735

Compare expression of checked genes

Lus10016890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.