Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 131 / 4e-33 GRAS RGL2 RGA-like 2 (.1) AT5G41920 119 / 2e-29 GRAS GRAS family transcription factor (.1) AT3G50650 120 / 3e-29 GRAS SCL7 GRAS family transcription factor (.1) AT5G66770 119 / 1e-28 GRAS GRAS family transcription factor (.1) AT2G29065 115 / 3e-27 GRAS family transcription factor (.1) AT5G17490 109 / 1e-25 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G66350 108 / 2e-25 GRAS RGL1 RGA-like 1 (.1) AT2G01570 107 / 1e-24 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G63100 106 / 2e-24 GRAS GRAS family transcription factor (.1) AT4G17230 106 / 2e-24 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037756 [exp] 784 / 0 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016892 [exp] 672 / 0 AT1G50420 155 / 1e-41 scarecrow-like 3 (.1) Lus10037758 [exp] 375 / 7e-125 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 369 / 1e-122 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 355 / 5e-117 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016894 [exp] 289 / 1e-93 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10001451 [exp] 255 / 5e-80 AT5G17490 179 / 7e-51 RGA-like protein 3 (.1) Lus10022414 [exp] 253 / 9e-79 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 252 / 1e-78 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 366 / 7e-122 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 336 / 1e-109 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 318 / 3e-103 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 278 / 2e-87 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 273 / 2e-86 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 248 / 2e-77 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 209 / 1e-61 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.007G026300 [exp] 139 / 1e-35 AT5G66770 589 / 0.0 GRAS family transcription factor (.1) Potri.005G123800 [exp] 128 / 9e-32 AT5G66770 650 / 0.0 GRAS family transcription factor (.1) Potri.012G020200 [exp] 124 / 3e-31 AT1G55580 415 / 8e-143 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016891 pacid=23179100 polypeptide=Lus10016891 locus=Lus10016891.g ID=Lus10016891.BGIv1.0 annot-version=v1.0 ATGGCAAACAAGGACATCATGATTCCGCCTCCTCTGTGCGTAGATGGTTTCAGCACCGATGATCTCGACGTCTACGACATTACAAGCTTCCGGAATCTCC TTGCTCAAAGGACATCCTCGCCCGTTGTTACTAATGTTATTCCACCAAGAAATGCGGCATTGTCGGTTGAAGAGCTCGTCAGGATTGCTGCGTCGAAGTT CATACTGTCTCATTCCAACGACTCCTCCTTCCATCTGTCAACCACGCTCTCCGATTCTGAATCGGATAGCGTGGAGCTGGCGCAGCTTCTCCTTCAAGCT GCCGAAAAAGTTGGAAGGGGTGACAGCGCCGAGACATTTATCGACAAGTGTGAAATGTTGTCTTCCCCTTCAGGAACCCCGATTCAGAGGCTAGTCTTCT ACTACTCTCGGGCTTTACGAGTCCGCATCGGTCGAGAAATCGGAGGAATTGTGACCAAAGATCAATCGCCGGAGGAGGATCTTTACAAAGTGGTGATGAC TCCGAGCTTCCGGTTCGTGGAATTCCATAGGAGAATCCCCTTTTCTCCGGTTGCACAATTCGCCGGGATCCAGTCGATTGTCGAACACGTCGAGAAATCC CAAAATATCCACGTCATCGATTTCGGAATTCGGAACGGACATCAATGGACGATCCTAATGCAAGCTCTAGCCTCAAGAAAACGACGCCGTGTGAAGCACC TGAAGATAACGGCTGTTGCCACTTTAGGCAAGCACTTAATCGAGCAAAGGGGTAATATGCTGCTCAGCTTCGCCCAAGCAATGAACCTCCCCTGCAGCTT CCACGTGGTGATGGTCCATGATCTGACCGAACTGAGACACGACCATTTCAAGATCGAACCGGAAGAGGCCGTGGCGGTTCTAGCCGAATACATTATCAAT ACTTTGACTGAACCAGTCGAGCGGATCGACTTGGTTATCCGAGCGATCAGGAGTCTGTACCCGATCGTGATGGTGGTGACGGAGATGGAGGTGAACATGA ACTCGCCGGTTTTCGTAAACCGGTTCGTGGAGTCGCTGTTCTTCGCGAGCGCATACTTCGATTGCTTCGAGGATTGCATGGATCGGGACGAGGAAGCGAG GGTGTATGGGGAGTCGATGTTGTTTGGAGAAGGGAGTAAAGTTGTGGTGGCGGAGGAGAGGTCCATAAGGAACATGAAGGCAGATGTTTGGAGGATTTAT TTCAAGAGGGTTGGAATGGTGGAGGAGGCATTGAGTCAATCGTCATTGTATCAGGCCGGATTAGTAGTTAAGAAGGTGCCTTGTTGGAGTCAGTGTACAT TTGGTACGGATGAGAAGAGCTTGATTGTTGGTTGGAAGGGTACGCCCATTCTTTCTGTCACTGCTTGGAAGTTTTGTTAG
AA sequence Show only first row Show all	>Lus10016891 pacid=23179100 polypeptide=Lus10016891 locus=Lus10016891.g ID=Lus10016891.BGIv1.0 annot-version=v1.0 MANKDIMIPPPLCVDGFSTDDLDVYDITSFRNLLAQRTSSPVVTNVIPPRNAALSVEELVRIAASKFILSHSNDSSFHLSTTLSDSESDSVELAQLLLQA AEKVGRGDSAETFIDKCEMLSSPSGTPIQRLVFYYSRALRVRIGREIGGIVTKDQSPEEDLYKVVMTPSFRFVEFHRRIPFSPVAQFAGIQSIVEHVEKS QNIHVIDFGIRNGHQWTILMQALASRKRRRVKHLKITAVATLGKHLIEQRGNMLLSFAQAMNLPCSFHVVMVHDLTELRHDHFKIEPEEAVAVLAEYIIN TLTEPVERIDLVIRAIRSLYPIVMVVTEMEVNMNSPVFVNRFVESLFFASAYFDCFEDCMDRDEEARVYGESMLFGEGSKVVVAEERSIRNMKADVWRIY FKRVGMVEEALSQSSLYQAGLVVKKVPCWSQCTFGTDEKSLIVGWKGTPILSVTAWKFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10016891 [exp]	0	1
AT2G23440			unknown protein		Lus10009347 [exp]	10.4	0.6964
					Lus10024617 [exp]	15.4	0.6772
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	34.8	0.7081
AT1G80530			Major facilitator superfamily ...		Lus10030112 [exp]	41.1	0.5735
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	45.1	0.6900
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	68.4	0.6449
AT3G59650			mitochondrial ribosomal protei...		Lus10022178 [exp]	72.5	0.6454
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	78.9	0.6100
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10020243 [exp]	81.0	0.6480
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	85.6	0.6525

Compare expression of checked genes

Lus10016891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.