Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 130 / 1e-32 GRAS RGL2 RGA-like 2 (.1) AT5G59450 125 / 1e-30 GRAS SCL11 GRAS family transcription factor (.1) AT2G29065 123 / 6e-30 GRAS family transcription factor (.1) AT5G41920 119 / 2e-29 GRAS GRAS family transcription factor (.1) AT5G17490 119 / 5e-29 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G46600 115 / 1e-27 GRAS GRAS family transcription factor (.1.2.3) AT5G66770 112 / 1e-26 GRAS GRAS family transcription factor (.1) AT3G50650 112 / 2e-26 GRAS SCL7 GRAS family transcription factor (.1) AT1G07520 112 / 2e-26 GRAS GRAS family transcription factor (.1) AT2G37650 111 / 7e-26 GRAS SCL9 GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037756 [exp] 688 / 0 AT1G50420 156 / 5e-42 scarecrow-like 3 (.1) Lus10016891 [exp] 687 / 0 AT3G03450 152 / 2e-40 RGA-like 2 (.1) Lus10037758 [exp] 399 / 3e-134 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 396 / 3e-133 AT3G03450 189 / 5e-53 RGA-like 2 (.1) Lus10016893 [exp] 371 / 3e-123 AT3G03450 175 / 1e-47 RGA-like 2 (.1) Lus10016894 [exp] 312 / 1e-102 AT1G66350 155 / 4e-42 RGA-like 1 (.1) Lus10022414 [exp] 267 / 5e-84 AT2G01570 169 / 5e-46 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018098 [exp] 261 / 3e-82 AT2G01570 165 / 9e-45 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10018100 [exp] 253 / 5e-79 AT2G01570 162 / 1e-43 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143500 [exp] 381 / 8e-128 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143700 [exp] 343 / 1e-112 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143600 [exp] 314 / 2e-101 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.002G195600 [exp] 303 / 3e-97 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.010G143400 [exp] 282 / 4e-90 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.010G143200 [exp] 246 / 1e-76 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.014G120000 [exp] 229 / 6e-69 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.001G242000 [exp] 122 / 1e-29 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.001G242100 [exp] 121 / 2e-29 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 120 / 8e-29 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10016892 pacid=23179049 polypeptide=Lus10016892 locus=Lus10016892.g ID=Lus10016892.BGIv1.0 annot-version=v1.0 ATGATCTTCTCCACATCGAAATTACCAGCTCCACCTCCTCCTCTATCCGTAGAGGATTACACCACCAATGATCTTCTCCACATCGAAATTACCAGCTTTC GGAATCTCCTTGCTCAAAGGACCTCCTCGCCCGTTATTAATGATGTTATTCCTCCACCATTGTCAGTTGAAGAGCTCGTCAGGATTGCTGCATCCAAGTT CATACTCTCTCGTTCCAATGATTCATCCTTCCACCTCTCAACCACGCTCTCCGATTCTGAATCAGAGAGCGTGGAGCTCACCCAGCTTCTCCTTGAAGCT GCCGAGAAAGTCGGAAGGGGTGACCTCGACAGTGCCGACACATTTCTCGAGAAGTGTGACCTGCAGAGTTCCCCTTCAGGTACCCCAATTCAGAGGCTGG TCTTCTACTACTCTCAAGCTTTACGGGTCCGGATCTGTCACGAAATCGGAGGAGAGCAATCATCATCATCGGAGGAGGAGGGTCTTTACAAAGTGGTGAT GACTCCGAGCTTTCGGTTCGTGGAATTCCACAGGCAGATCCCCTTTTCTCAGGTTGCACAATTCGCCGGGATCCAATCCATCATCGAACACGTGGAGAAA TCTAGACACATCCACGTCATCGACTTCGGCATTCGGAACGGACATCAATGGACGATCCTGATGCAAGCTTTAGCCTCACGAAAACGACGCCGTGTGAAGC ACCTGAAGATTACGGCCGTCGCCACTTTGGGCAAGCACTTAATCGAACAGACGGGTAAAAGGCTGCTCAGCTGCGCCCAAGAAATGAACCTGCCCTGCAG CTTCCAGGTGGTGATGGTCCACGATCTGACCGAATTAAGACGCGACCATTTCGAGATCGAAACGGAAGAGGCCGTGGCGGTTCTGGCCAATCACATTCTC AACACTCTGACTGAACCGGTCGAGCGGATCGACTCGGTTATCCGAGCGATCAGGAGCCTGTACCCGACCGTGATGGTGGTGACTGAGGTGGAAGTGAACA TGAACTCACCAGTTTTCGTGAACCGGTTCGTGGAGTCGCTGTTCTTTGCGAGCGCGTACTTCGATTGCTTCGAGGATTGCATGGATCGGGGGGAGGAAGC GAGGGTGTATGGGGAGTCGATGTTGTTCGGAGAAGGGAGTAAAGTTGTGATGGCGGAGGAGAGGTACATAAGGAGCATAAAGGCGGATGTTTGGAGGGTT TATTTCATGAGGGTGGGAATGGTGGAGGCGGTTTTGAGTCGATCGTCGTTGTATCAAGCCGAATTAGTGGCTAAGAAGGTGCCTTGTTGGAGTCAGTGTA CGGTTAATACAGATGGAAAAAGTTTGATTGTTGGTTGGAAGGGTACGCCTATTCTTTCTGTCACTGCTTGGAAGTTCAGCTAA
AA sequence Show only first row Show all	>Lus10016892 pacid=23179049 polypeptide=Lus10016892 locus=Lus10016892.g ID=Lus10016892.BGIv1.0 annot-version=v1.0 MIFSTSKLPAPPPPLSVEDYTTNDLLHIEITSFRNLLAQRTSSPVINDVIPPPLSVEELVRIAASKFILSRSNDSSFHLSTTLSDSESESVELTQLLLEA AEKVGRGDLDSADTFLEKCDLQSSPSGTPIQRLVFYYSQALRVRICHEIGGEQSSSSEEEGLYKVVMTPSFRFVEFHRQIPFSQVAQFAGIQSIIEHVEK SRHIHVIDFGIRNGHQWTILMQALASRKRRRVKHLKITAVATLGKHLIEQTGKRLLSCAQEMNLPCSFQVVMVHDLTELRRDHFEIETEEAVAVLANHIL NTLTEPVERIDSVIRAIRSLYPTVMVVTEVEVNMNSPVFVNRFVESLFFASAYFDCFEDCMDRGEEARVYGESMLFGEGSKVVMAEERYIRSIKADVWRV YFMRVGMVEAVLSRSSLYQAELVAKKVPCWSQCTVNTDGKSLIVGWKGTPILSVTAWKFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	0	1
					Lus10018970 [exp]	1.4	0.9095
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	2.8	0.8972
AT1G61420			S-locus lectin protein kinase ...		Lus10019600 [exp]	3.5	0.8698
					Lus10015310 [exp]	4.6	0.8730
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	5.7	0.8575
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	7.1	0.8694
AT5G25250			SPFH/Band 7/PHB domain-contain...		Lus10001944 [exp]	7.3	0.8541
AT1G60370			F-box and associated interacti...		Lus10008162 [exp]	7.5	0.8063
					Lus10021453 [exp]	7.7	0.8632
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	8.1	0.8426

Compare expression of checked genes

Lus10016892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.